Browse Element(s) Details


OsAffx.28364.1.S1_x_at

Description tigr:9635.m00915
TID=OsAffx.28364.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hipl1 protein precursor
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0952011/11HIPL1 protein precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g09470NANA7+4997119..4998846Cell Division Protein AAA ATPase family, putative, expressed
LOC_Os07g09480Os.56296.1.S1_at11/117+5002172..5004026ATPase, AAA family protein, expressed
LOC_Os07g09490OsAffx.28363.1.S1_at11/117+5007890..5009323Cell Division Protein AAA ATPase family, putative
LOC_Os07g09490OsAffx.25760.1.S1_x_at1/117+5007890..5009323Cell Division Protein AAA ATPase family, putative
LOC_Os07g09500OsAffx.16175.1.S1_at10/117+5011088..5012727hypothetical protein
LOC_Os07g09510Os.9419.1.S1_at10/117+5013651..5018509retrotransposon protein, putative, unclassified, expressed
LOC_Os07g09520OsAffx.28364.1.S1_at11/117+5021990..5025978HIPL1 protein precursor, putative, expressed
LOC_Os07g09520OsAffx.28364.1.S1_x_at11/117+5021990..5025978HIPL1 protein precursor, putative, expressed
LOC_Os07g09530OsAffx.28365.1.S1_at11/117+5028926..5032124hypothetical protein
LOC_Os07g09540Os.47463.1.S1_x_at5/117+5040350..5042412transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g09540Os.14491.2.S1_x_at4/117+5040350..5042412transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0031225cellular_componentanchored to membrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28364.1.S1_x_at--602--2091Chr07:5025540..5025564 (25 bp)
ACATCTTCTCCTTCGGCGAGGACAA
LOC_Os07g09520
OsAffx.28364.1.S1_x_at--1117--9531Chr07:5025576..5025600 (25 bp)
TCTACCTGCTCACCAGCAAGGGCGT
LOC_Os07g09520
OsAffx.28364.1.S1_x_at--951--9131Chr07:5025626..5025650 (25 bp)
TGCGGCTACGCGTGCCCGATCAAGA
LOC_Os07g09520
OsAffx.28364.1.S1_x_at--121--9951Chr07:5025632..5025656 (25 bp)
TACGCGTGCCCGATCAAGAGCTCCG
LOC_Os07g09520
OsAffx.28364.1.S1_x_at--612--3831Chr07:5025749..5025773 (25 bp)
CTGCTGATGGGAGCGTTGCTTGCAC
LOC_Os07g09520
OsAffx.28364.1.S1_x_at--1122--6251Chr07:5025754..5025778 (25 bp)
GATGGGAGCGTTGCTTGCACTCTGA
LOC_Os07g09520
OsAffx.28364.1.S1_x_at--801--6671Chr07:5025763..5025787 (25 bp)
GTTGCTTGCACTCTGAGCTGATGAT
LOC_Os07g09520
OsAffx.28364.1.S1_x_at--296--1611Chr07:5025778..5025802 (25 bp)
AGCTGATGATGGTCGGAGTGATTTT
LOC_Os07g09520
OsAffx.28364.1.S1_x_at--631--7611Chr07:5025827..5025851 (25 bp)
GGGAATTTGTCAGCTCGTTTTTAAT
LOC_Os07g09520
OsAffx.28364.1.S1_x_at--180--9591Chr07:5025883..5025907 (25 bp)
TCTTGTTTGTGCAGCTTTTGTTCTT
LOC_Os07g09520
OsAffx.28364.1.S1_x_at--45--7351Chr07:5025891..5025915 (25 bp)
GTGCAGCTTTTGTTCTTGGGATAAT
LOC_Os07g09520
Target Sequence 
ACATCTTCTCCTTCGGCGAGGACAACGCCGGCGACGTCTACCTGCTCACCAGCAAGGGCGTCTACCGGGTGGTCGACCCG
GCGGAGTGCGGCTACGCGTGCCCGATCAAGAGCTCCGCGCCGGGGACCTCGCCGCCGCCGGGCTCGTCGCCGAGCGGCGG
CGCCGCCGCCGCCGTCGTCCCGGCCGCCGCGGCGACGATGGCGGCGCTGCTGCTGATGGGAGCGTTGCTTGCACTCTGAG
CTGATGATGGTCGGAGTGATTTTTTTTGGCAAGGAAAAATTGCTTCTGGGAATTTGTCAGCTCGTTTTTAATTATTTATG
GATTTGTGATGTGATATATTTGATCTTGTTTGTGCAGCTTTTGTTCTTGGGATAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28364.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis