Browse Element(s) Details


OsAffx.28365.1.S1_at

Description tigr:9635.m00916
TID=OsAffx.28365.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0953011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g09480Os.56296.1.S1_at11/117+5002172..5004026ATPase, AAA family protein, expressed
LOC_Os07g09490OsAffx.28363.1.S1_at11/117+5007890..5009323Cell Division Protein AAA ATPase family, putative
LOC_Os07g09490OsAffx.25760.1.S1_x_at1/117+5007890..5009323Cell Division Protein AAA ATPase family, putative
LOC_Os07g09500OsAffx.16175.1.S1_at10/117+5011088..5012727hypothetical protein
LOC_Os07g09510Os.9419.1.S1_at10/117+5013651..5018509retrotransposon protein, putative, unclassified, expressed
LOC_Os07g09520OsAffx.28364.1.S1_at11/117+5021990..5025978HIPL1 protein precursor, putative, expressed
LOC_Os07g09520OsAffx.28364.1.S1_x_at11/117+5021990..5025978HIPL1 protein precursor, putative, expressed
LOC_Os07g09530OsAffx.28365.1.S1_at11/117+5028926..5032124hypothetical protein
LOC_Os07g09540Os.47463.1.S1_x_at5/117+5040350..5042412transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g09540Os.14491.2.S1_x_at4/117+5040350..5042412transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g09550NANA7+5053585..5055489hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28365.1.S1_at--129--8371Chr07:5031607..5031631 (25 bp)
GGCGGTGCAAGAACCAGCAGCTGCC
LOC_Os07g09530
OsAffx.28365.1.S1_at--802--8251Chr07:5031678..5031702 (25 bp)
GGCAGCAACGACGAGTACTTCGAGC
LOC_Os07g09530
OsAffx.28365.1.S1_at--199--1871Chr07:5031685..5031709 (25 bp)
ACGACGAGTACTTCGAGCTCAGCGT
LOC_Os07g09530
OsAffx.28365.1.S1_at--791--1871Chr07:5031688..5031712 (25 bp)
ACGAGTACTTCGAGCTCAGCGTCGG
LOC_Os07g09530
OsAffx.28365.1.S1_at--853--5651Chr07:5031816..5031840 (25 bp)
GACAGGGCGCCGTTCAAGATCTTCG
LOC_Os07g09530
OsAffx.28365.1.S1_at--4--4571Chr07:5031822..5031846 (25 bp)
GCGCCGTTCAAGATCTTCGTGGTGT
LOC_Os07g09530
OsAffx.28365.1.S1_at--664--10511Chr07:5031828..5031852 (25 bp)
TTCAAGATCTTCGTGGTGTCCAACA
LOC_Os07g09530
OsAffx.28365.1.S1_at--471--2811Chr07:5031831..5031855 (25 bp)
AAGATCTTCGTGGTGTCCAACACCG
LOC_Os07g09530
OsAffx.28365.1.S1_at--806--431Chr07:5031834..5031858 (25 bp)
ATCTTCGTGGTGTCCAACACCGTCG
LOC_Os07g09530
OsAffx.28365.1.S1_at--436--1931Chr07:5032023..5032047 (25 bp)
ACGGAGCGGTGGCTGGCGTACCTGG
LOC_Os07g09530
OsAffx.28365.1.S1_at--942--4631Chr07:5032038..5032062 (25 bp)
GCGTACCTGGTCATCGCCATCGGAG
LOC_Os07g09530
Target Sequence 
GGCGGTGCAAGAACCAGCAGCTGCCGCCGGTGGCGACGTACCAGTCGCTGCGCAGCCGGCGGCCGGGCTCCGGCAGCAAC
GACGAGTACTTCGAGCTCAGCGTCGGCACCTACACCCTCGTGGCCACCCTCATCGCCACCGTCACCTTCGCCGCCACATT
CACCATGCCCGGCGGCTACAACCAGAACACGGGGCTCGCCATCCACGCCGACAGGGCGCCGTTCAAGATCTTCGTGGTGT
CCAACACCGTCGCCATGTGCAGCGCCATCGTCGTCGTCTTCTGCTTCATCTGGGCGTGGAGGGACCCCGTCAAGTTCAAG
CTCGACCAGCTCACCTGGGGACACCGCCTCACCGTCGTCGCCTGCCTCGCCATGATCGTCTCCCTCATGACGTCCGTCTA
CCTCACCGTCCTCCCCACGGAGCGGTGGCTGGCGTACCTGGTCATCGCCATCGGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28365.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis