Browse Element(s) Details


OsAffx.28406.1.S1_at

Description gb:NM_186576.1
DB_XREF= gi:34900237
TID=OsAffx.28406.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) OSJNBa0031C24.29 (OSJNBa0031C24.29), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g116598/11
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g11620OsAffx.28403.1.S1_at11/117+6411376..6412380hypothetical protein
LOC_Os07g11630Os.6445.1.S1_x_at11/117+6414328..6415011Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os07g11640Os.8606.1.S1_at1/117+6425345..6429933retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g11640OsAffx.22947.1.S1_x_at1/117+6425345..6429933retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g11650Os.8005.2.S1_x_at11/117+6430681..6431409Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os07g11650Os.8005.3.S1_x_at10/117+6430681..6431409Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os07g11650Os.6445.1.S1_x_at1/117+6430681..6431409Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os07g11659OsAffx.10222.1.S1_x_at9/117+6437346..6438294NA
LOC_Os07g11659OsAffx.28406.1.S1_at8/117+6437346..6438294NA
LOC_Os07g11659OsAffx.28406.1.S1_x_at8/117+6437346..6438294NA
LOC_Os07g11659OsAffx.10222.1.S1_at8/117+6437346..6438294NA
LOC_Os07g11670OsAffx.10221.1.S1_at10/117+6450126..6455981retrotransposon protein, putative, unclassified
LOC_Os07g11670OsAffx.12243.1.S1_at4/117+6450126..6455981retrotransposon protein, putative, unclassified
LOC_Os07g11670OsAffx.20517.2.S1_x_at1/117+6450126..6455981retrotransposon protein, putative, unclassified
LOC_Os07g11680NANA7+6457520..6464955retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28406.1.S1_at--452--5951Chr07:6590373..6590397 (25 bp)
GAGCACAGCAACCATGTCTATGCGG
NONE
OsAffx.28406.1.S1_at--508--2151Chr07:6590377..6590401 (25 bp)
ACAGCAACCATGTCTATGCGGTCAG
NONE
OsAffx.28406.1.S1_at--894--592Chr07:6590392..6590416 (25 bp)
ATGCGGTCAGGGTGCGGCGGTTCAT
NONE
OsAffx.28406.1.S1_at--126--1212Chr07:6590451..6590475 (25 bp)
AGTTATGGAATGAAGTACGCCGCTT
NONE
OsAffx.28406.1.S1_at--831--8512Chr07:6590456..6590480 (25 bp)
TGGAATGAAGTACGCCGCTTATCTT
NONE
OsAffx.28406.1.S1_at--260--8972Chr07:6590461..6590485 (25 bp)
TGAAGTACGCCGCTTATCTTTTTGT
NONE
OsAffx.28406.1.S1_at--245--1192Chr07:6590464..6590488 (25 bp)
AGTACGCCGCTTATCTTTTTGTTCG
NONE
OsAffx.28406.1.S1_at--1017--9932Chr07:6590466..6590490 (25 bp)
TACGCCGCTTATCTTTTTGTTCGGA
NONE
OsAffx.28406.1.S1_at--969--4152Chr07:6590468..6590492 (25 bp)
CGCCGCTTATCTTTTTGTTCGGAAT
NONE
OsAffx.28406.1.S1_at--533--4112Chr07:6590471..6590495 (25 bp)
CGCTTATCTTTTTGTTCGGAATGTT
NONE
OsAffx.28406.1.S1_at--953--9551Chr07:6590477..6590501 (25 bp)
TCTTTTTGTTCGGAATGTTGCGAAG
NONE
Target Sequence 
GAGCACAGCAACCATGTCTATGCGGTCAGGGTGCGGCGGTTCATGTGCAGTTTTTGTTTTGGCAAAAAAAGAAAAGAAAG
TTATGGAATGAAGTACGCCGCTTATCTTTTTGTTCGGAATGTTGCGAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28406.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis