Browse Element(s) Details


OsAffx.28578.1.S1_at

Description tigr:9635.m02440
TID=OsAffx.28578.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2546011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g25450Os.26478.1.S1_at11/117+14561567..14568313histone-lysine N-methyltransferase, H3 lysine-9 specific 2, putative, expressed
LOC_Os07g25460OsAffx.28578.1.S1_at11/117+14572842..14574232hypothetical protein
LOC_Os07g25460Os.27476.1.A1_at10/117+14572842..14574232hypothetical protein
LOC_Os07g25470NANA7+14576642..14578288KE03 protein, putative, expressed
LOC_Os07g25480OsAffx.5434.1.S1_at11/117+14592890..14593169hypothetical protein
LOC_Os07g25484NANA7+14598828..14599110hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28578.1.S1_at--605--3191Chr07:14574171..14574195 (25 bp)
CAATCCGTCCATTTGATTTTGTTGG
LOC_Os07g25460
OsAffx.28578.1.S1_at--996--8191Chr07:14574148..14574172 (25 bp)
GGAAGTCCATTTGATTTTGTTGGAA
LOC_Os07g25460
OsAffx.28578.1.S1_at--599--10251Chr07:14574133..14574157 (25 bp)
TTTGTTGGAAGGAACCAGGGCGTCA
LOC_Os07g25460
OsAffx.28578.1.S1_at--681--2631Chr07:14574121..14574145 (25 bp)
AACCAGGGCGTCAATTATGTAGGGA
LOC_Os07g25460
OsAffx.28578.1.S1_at--1094--10151Chr07:14573957..14573981 (25 bp)
TATCTGATATTGTTGCTACCGACAC
LOC_Os07g25460
OsAffx.28578.1.S1_at--120--10791Chr07:14573948..14573972 (25 bp)
TTGTTGCTACCGACACTTATACAGT
LOC_Os07g25460
OsAffx.28578.1.S1_at--884--4851Chr07:14573943..14573967 (25 bp)
GCTACCGACACTTATACAGTGATAC
LOC_Os07g25460
OsAffx.28578.1.S1_at--458--1091Chr07:14573926..14573950 (25 bp)
AGTGATACTTTCAGCTCAGATGATA
LOC_Os07g25460
OsAffx.28578.1.S1_at--849--3431Chr07:14573707..14573934 (25 bp)
CAGATGATAACAGTTGCCATCCCAG
LOC_Os07g25460
OsAffx.28578.1.S1_at--1123--1351Chr07:14573639..14573663 (25 bp)
AGAGCTACAGCCATTAGAGGAGTTC
LOC_Os07g25460
OsAffx.28578.1.S1_at--1159--1651Chr07:14573631..14573655 (25 bp)
AGCCATTAGAGGAGTTCACCACACC
LOC_Os07g25460
Target Sequence 
CAATCCGTCCATTTGATTTTGTTGGAAGTCCATTTGATTTTGTTGGAAGGAACCAGGGCGTCAATTATGTAGGGAGAATA
CAATACGGTATATTATCTGATATTGTTGCTACCGACACTTATACAGTGATACTTTCAGCTCAGATGATAACAGTTGCCAT
CCCAGTTGTACCCACAATCAGGGTACTTGTGACATTCACAAAGTTTGAAGAGCTACAGCCATTAGAGGAGTTCACCACAC
C

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28578.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis