Browse Element(s) Details


OsAffx.28682.2.S1_at

Description tigr:9635.m02973
TID=OsAffx.28682.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3042011/11hypothetical protein
LOC_Os07g305609/11hypothetical protein
LOC_Os08g218302/11hypothetical protein
LOC_Os06g224801/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g30394OsAffx.28679.1.S1_at11/117+17979033..17979491hypothetical protein
LOC_Os07g30410OsAffx.28680.1.S1_at10/117+17986242..17990295Protein kinase domain containing protein
LOC_Os07g30420OsAffx.28682.2.S1_at11/117+18004212..18004475hypothetical protein
LOC_Os07g30420OsAffx.28682.2.S1_x_at11/117+18004212..18004475hypothetical protein
LOC_Os07g30430OsAffx.20329.1.S1_at2/117+18010329..18014270retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g30440OsAffx.28575.1.S1_at1/117+18014625..18015617hypothetical protein
LOC_Os07g30450OsAffx.16494.1.S1_at11/117+18021917..18022520hypothetical protein
LOC_Os07g30460NANA7+18023906..18028372retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28682.2.S1_at--356--9872Chr07:18004299..18004323 (25 bp)
TATTCAAAAGTACAAGTGCCAAATG
LOC_Os07g30420
OsAffx.28682.2.S1_at--513--9691Chr07:18004296..18004320 (25 bp)
TCAAAAGTACAAGTGCCAAATGCCG
LOC_Os07g30420
OsAffx.28682.2.S1_at--807--2432Chr07:18074482..18074506 (25 bp)
AAAAGTACAAGTGCCAAATGCCGAA
LOC_Os07g30560
OsAffx.28682.2.S1_at--888--2832Chr07:18074480..18074504 (25 bp)
AAGTACAAGTGCCAAATGCCGAAGT
LOC_Os07g30560
OsAffx.28682.2.S1_at--186--1172Chr07:18074479..18074503 (25 bp)
AGTACAAGTGCCAAATGCCGAAGTT
LOC_Os07g30560
OsAffx.28682.2.S1_at--1012--7032Chr07:18074478..18074502 (25 bp)
GTACAAGTGCCAAATGCCGAAGTTA
LOC_Os07g30560
OsAffx.28682.2.S1_at--610--9832Chr07:18074477..18074501 (25 bp)
TACAAGTGCCAAATGCCGAAGTTAG
LOC_Os07g30560
OsAffx.28682.2.S1_at--912--3192Chr07:18074475..18074499 (25 bp)
CAAGTGCCAAATGCCGAAGTTAGAA
LOC_Os07g30560
OsAffx.28682.2.S1_at--189--7273Chr08:13022479..13022499 (21 bp)
GTGCCAAATGCCGAAGTTAGAAGGA
LOC_Os08g21830
OsAffx.28682.2.S1_at--538--4373Chr08:13022479..13022502 (24 bp)
CCAAATGCCGAAGTTAGAAGGAGAA
LOC_Os08g21830
OsAffx.28682.2.S1_at--754--2913Chr06:13063200..13063230 (25 bp)
AAGGAGCATCTGGTGCCAAAGGAGA
LOC_Os06g22480
Target Sequence 
TATTCAAAAGTACAAGTGCCAAATGCCGAAGTTAGAAGGAGAAGGAGCATCTGGTGCCAAAGGAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28682.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis