Browse Element(s) Details


OsAffx.28679.1.S1_at

Description tigr:9635.m02982
TID=OsAffx.28679.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3049411/11hypothetical protein
LOC_Os07g3039411/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g30430OsAffx.20329.1.S1_at2/117+18010329..18014270retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g30440OsAffx.28575.1.S1_at1/117+18014625..18015617hypothetical protein
LOC_Os07g30450OsAffx.16494.1.S1_at11/117+18021917..18022520hypothetical protein
LOC_Os07g30460NANA7+18023906..18028372retrotransposon protein, putative, unclassified
LOC_Os07g30469Os.51026.1.S1_x_at1/117+18031389..18032849UDP-glucoronosyl and UDP-glucosyl transferase family protein
LOC_Os07g30480NANA7+18034299..18037355transposon protein, putative, Mutator sub-class
LOC_Os07g30494OsAffx.28679.1.S1_at11/117+18038154..18038612hypothetical protein
LOC_Os07g30510OsAffx.28680.1.S1_at10/117+18045363..18049416Protein kinase domain containing protein
LOC_Os07g30520OsAffx.28681.1.S1_x_at11/117+18054436..18055022hypothetical protein
LOC_Os07g30530Os.10827.1.S1_x_at10/117+18059726..18063514transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g30530Os.46055.2.S1_x_at6/117+18059726..18063514transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28679.1.S1_at--996--8432Chr07:18038556..18038580 (25 bp)
GGCCACGACAAATTTTGAGTTGCAT
LOC_Os07g30494
OsAffx.28679.1.S1_at--734--10292Chr07:18038506..18038530 (25 bp)
TTTCCTTCCCTTTCAAGCAGCAGGG
LOC_Os07g30494
OsAffx.28679.1.S1_at--11--5072Chr07:18038490..18038514 (25 bp)
GCAGCAGGGTGCACGATGCTATTTA
LOC_Os07g30494
OsAffx.28679.1.S1_at--567--10112Chr07:18038467..18038491 (25 bp)
TATGGATCTGGGAGGATCTCCTCAG
LOC_Os07g30494
OsAffx.28679.1.S1_at--366--3352Chr07:18038411..18038435 (25 bp)
CACGCCGGCGAGTTTGATAGCCTAT
LOC_Os07g30494
OsAffx.28679.1.S1_at--232--312Chr07:18038395..18038419 (25 bp)
ATAGCCTATGGGAGACATGTGACGA
LOC_Os07g30494
OsAffx.28679.1.S1_at--491--3432Chr07:18038360..18038384 (25 bp)
CAGTTGTTAGATGTGCAGGGTCGCA
LOC_Os07g30494
OsAffx.28679.1.S1_at--235--3552Chr07:18038334..18038358 (25 bp)
CATCGAGTTGTGTAGTATCTTGGAA
LOC_Os07g30494
OsAffx.28679.1.S1_at--101--8392Chr07:18038301..18038325 (25 bp)
GGCGCAATTGCAGCTCTATAGAGAT
LOC_Os07g30494
OsAffx.28679.1.S1_at--743--8212Chr07:18038229..18038253 (25 bp)
GGAATCAGAGAAGGCCATGCTCCAA
LOC_Os07g30494
OsAffx.28679.1.S1_at--303--4792Chr07:18038211..18038235 (25 bp)
GCTCCAATGGGTTCTGTATATGCTA
LOC_Os07g30494
Target Sequence 
GGCCACGACAAATTTTGAGTTGCATTTCTTTGATTTCTTTCCCAATCCCCTTTCCTTCCCTTTCAAGCAGCAGGGTGCAC
GATGCTATTTATGGATCTGGGAGGATCTCCTCAGGGAGTATGTCGAGGAGATAGTGGCATACTGCCACGCCGGCGAGTTT
GATAGCCTATGGGAGACATGTGACGAGTTGCGGTGGCAGTTGTTAGATGTGCAGGGTCGCAACATCGAGTTGTGTAGTAT
CTTGGAAGCAAAAGAGGCGCAATTGCAGCTCTATAGAGATGAGTTGAATCAGTCAAAGAGGGAGGTTGCAGAGATGAAGC
ACAAGATGGAATCAGAGAAGGCCATGCTCCAATGGGTTCTGTATATGCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28679.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis