Browse Element(s) Details


OsAffx.28683.1.S1_at

Description tigr:9635.m02992
TID=OsAffx.28683.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Protease inhibitorseed storageLTP family, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3059010/11Protease inhibitor/seed storage/LTP family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g30570NANA7+18087573..18090393retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g30580Os.10703.2.S1_x_at1/117+18090814..18096924retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g30590OsAffx.28683.1.S1_at10/117+18101049..18101918Protease inhibitor/seed storage/LTP family protein
LOC_Os07g30600OsAffx.5485.1.S1_at11/117+18104531..18109557Male sterility protein
LOC_Os07g30610Os.51026.1.S1_x_at1/117+18112018..18113466UDP-glucoronosyl and UDP-glucosyl transferase family protein
LOC_Os07g30620Os.51026.1.S1_x_at11/117+18122857..18124650UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os07g30620Os.51026.1.S1_at11/117+18122857..18124650UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006869biological_processlipid transport
GO:0031225cellular_componentanchored to membrane
GO:0008289molecular_functionlipid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28683.1.S1_at--997--1831Chr07:18101864..18101888 (25 bp)
ACGCTCTTGATGACCATCTTCCTCG
LOC_Os07g30590
OsAffx.28683.1.S1_at--241--8871Chr07:18101857..18101881 (25 bp)
TGATGACCATCTTCCTCGTGGCTCT
LOC_Os07g30590
OsAffx.28683.1.S1_at--411--9431Chr07:18101842..18101866 (25 bp)
TCGTGGCTCTCGTATCCGGTGGCCG
LOC_Os07g30590
OsAffx.28683.1.S1_at--574--9031Chr07:18101744..18101768 (25 bp)
TGCACCGCCGTGCTAGCCAAGCTGG
LOC_Os07g30590
OsAffx.28683.1.S1_at--159--4551Chr07:18101162..18101543 (25 bp)
GCCCTCAGCAACTGCAATGTGCCTT
LOC_Os07g30590
OsAffx.28683.1.S1_at--578--5151NONE
GCAACTGCAATGTGCCTTCACCAAA
NONE
OsAffx.28683.1.S1_at--310--771Chr07:18101146..18101168 (23 bp)
ATGTGCCTTCACCAAAAGGTGGAGA
LOC_Os07g30590
OsAffx.28683.1.S1_at--334--7731Chr07:18101129..18101153 (25 bp)
GGTGGAGACAGATCTGGTTCATCAC
LOC_Os07g30590
OsAffx.28683.1.S1_at--202--9471Chr07:18101117..18101141 (25 bp)
TCTGGTTCATCACCCAAGTCCACGG
LOC_Os07g30590
OsAffx.28683.1.S1_at--483--3351Chr07:18101086..18101110 (25 bp)
CAGCCCCGATCACAATAGTCGTCTT
LOC_Os07g30590
OsAffx.28683.1.S1_at--728--6451Chr07:18101079..18101103 (25 bp)
GATCACAATAGTCGTCTTCGTCGCC
LOC_Os07g30590
Target Sequence 
ACGCTCTTGATGACCATCTTCCTCGTGGCTCTCGTATCCGGTGGCCGGGTAGCGTCGCAGCCGCAGCCGCAGGAGGCGCC
AGCGCCGGCGCCGGAGGGCACCGGGAGCAGTAGCGGCGCCTGCACCGCCGTGCTAGCCAAGCTGGCGGACTGCGTGCAGT
ACGCCACCGCGGGCAGCCCGCTGAGGCAGCCGCCGGGGAGCTGCTGCACCGAGGTGGAGCGCGGCGTGAAGGACCCCGCC
GCCGTCGGCTGCGTCTGCACCCTCCTCGCCGGCAACACCTACGGCCTCCCTCTCAACCTCACGCGCGCCGCTGGCCTCCC
CGCCGCCTGCGGCGCCCCGCCCACCGCCCTCAGCAACTGCAATGTGCCTTCACCAAAAGGTGGAGACAGATCTGGTTCAT
CACCCAAGTCCACGGCCACTCCAGCCCCGATCACAATAGTCGTCTTCGTCGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28683.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis