Browse Element(s) Details


OsAffx.28783.1.S1_at

Description tigr:9635.m03628
TID=OsAffx.28783.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3668010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g36660Os.28943.1.S1_x_at2/117+21938142..21941339retrotransposon protein, putative, unclassified
LOC_Os07g36670NANA7+21941964..21947588retrotransposon protein, putative, unclassified
LOC_Os07g36680OsAffx.28783.1.S1_at10/117+21951147..21954784hypothetical protein
LOC_Os07g36690Os.15704.1.S1_at10/117+21968671..21971686Cellulose synthase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000271biological_processpolysaccharide biosynthesis
GO:0009832biological_processcell wall biosynthesis (sensu Magnoliophyta)
GO:0005783cellular_componentendoplasmic reticulum
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0016759molecular_functioncellulose synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28783.1.S1_at--752--9931NONE
TACCCGGTGGACAGTTCTAGGCGTA
NONE
OsAffx.28783.1.S1_at--953--6151Chr07:21952626..21952650 (25 bp)
GAGGTTGAGGTAGCCTCGGCTTCAC
LOC_Os07g36680
OsAffx.28783.1.S1_at--783--8291Chr07:21952643..21952667 (25 bp)
GGCTTCACCACAAATGGCTGCACAT
LOC_Os07g36680
OsAffx.28783.1.S1_at--286--1471Chr07:21953925..21953949 (25 bp)
AGAATCCATCCTCGGTTGTTATTTC
LOC_Os07g36680
OsAffx.28783.1.S1_at--794--6811Chr07:21953954..21953978 (25 bp)
GTTTTTTCCTCACTGACATATATGG
LOC_Os07g36680
OsAffx.28783.1.S1_at--293--10191Chr07:21953972..21953996 (25 bp)
TATATGGGTCCCATGTGTGCCACGT
LOC_Os07g36680
OsAffx.28783.1.S1_at--893--7451Chr07:21953986..21954010 (25 bp)
GTGTGCCACGTACGACAAAACCACT
LOC_Os07g36680
OsAffx.28783.1.S1_at--446--2371Chr07:21954003..21954027 (25 bp)
AAACCACTATCTAAACAGCGAGGGA
LOC_Os07g36680
OsAffx.28783.1.S1_at--1112--1611Chr07:21954019..21954043 (25 bp)
AGCGAGGGACTCGATTTGCTCCGGT
LOC_Os07g36680
OsAffx.28783.1.S1_at--66--211Chr07:21954032..21954056 (25 bp)
ATTTGCTCCGGTTTTCGAAGATGGA
LOC_Os07g36680
OsAffx.28783.1.S1_at--432--7431Chr07:21954061..21954085 (25 bp)
GTGTTATACCCAGTATTGCAGCTGA
LOC_Os07g36680
Target Sequence 
TACCCGGTGGACAGTTCTAGGCGTAAAAGCCTAGCAAAAGCTATTTCTGAAAAAGCAGCAAATGAGGTTGAGGTAGCCTC
GGCTTCACCACAAATGGCTGCACATTTTGGTTACAGAAGGGAGAGTCAGATGGGGAGGGAGAGTGTTGTGTACATAGGTG
GCACGCAAGAAACGGGTGGACGTCCACCCGAGAAATTAGAATCCATCCTCGGTTGTTATTTCTTTAGTTTTTTCCTCACT
GACATATATGGGTCCCATGTGTGCCACGTACGACAAAACCACTATCTAAACAGCGAGGGACTCGATTTGCTCCGGTTTTC
GAAGATGGAGGAGGTGTTATACCCAGTATTGCAGCTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28783.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis