Browse Element(s) Details


OsAffx.28864.1.S1_at

Description tigr:9635.m04189
TID=OsAffx.28864.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4184011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g41790Os.12302.1.S1_at11/117+25034930..25037385small nuclear ribonucleoprotein G, putative, expressed
LOC_Os07g41800Os.7961.1.S1_s_at11/117+25037542..25042037Peroxisome assembly protein 10, putative, expressed
LOC_Os07g41800Os.5260.1.S1_at11/117+25037542..25042037Peroxisome assembly protein 10, putative, expressed
LOC_Os07g41800Os.7961.1.S1_at2/117+25037542..25042037Peroxisome assembly protein 10, putative, expressed
LOC_Os07g41810Os.7961.1.S1_s_at11/117+25043658..25046687expressed protein
LOC_Os07g41810Os.7961.1.S1_at4/117+25043658..25046687expressed protein
LOC_Os07g41810Os.11984.1.S1_at3/117+25043658..25046687expressed protein
LOC_Os07g41820Os.11984.1.S2_at11/117+25047421..25049880expressed protein
LOC_Os07g41820Os.11984.1.S1_at11/117+25047421..25049880expressed protein
LOC_Os07g41830OsAffx.16679.1.S1_at11/117+25050161..25052503expressed protein
LOC_Os07g41840OsAffx.28864.1.S1_at11/117+25059228..25059732hypothetical protein
LOC_Os07g41850OsAffx.5596.1.S1_at11/117+25061621..25062850C1-like domain containing protein, expressed
LOC_Os07g41860OsAffx.5597.1.S1_at11/117+25075422..25075979C1-like domain containing protein
LOC_Os07g41870NANA7+25083044..25086349retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28864.1.S1_at--1140--951Chr07:25059594..25059650 (25 bp)
AGGACCACGGTCCACGCGGAACAAG
LOC_Os07g41840
OsAffx.28864.1.S1_at--990--7251Chr07:25059585..25059641 (25 bp)
GTCCACGCGGAACAAGGCCACGGCA
LOC_Os07g41840
OsAffx.28864.1.S1_at--909--8251Chr07:25059564..25059588 (25 bp)
GGCAGCCGCTTGAGTCTGTCATCGA
LOC_Os07g41840
OsAffx.28864.1.S1_at--715--1631Chr07:25059513..25059537 (25 bp)
AGCGTGCTGCCGAGGAAGACCTCCT
LOC_Os07g41840
OsAffx.28864.1.S1_at--360--9471Chr07:25059442..25059465 (24 bp)
TCTGGTTCCAGGCTCATCGATATGA
LOC_Os07g41840
OsAffx.28864.1.S1_at--330--4831Chr07:25059389..25059454 (25 bp)
GCTCATCGATATGATCTAGCCATTG
LOC_Os07g41840
OsAffx.28864.1.S1_at--238--7811Chr07:25059314..25059338 (25 bp)
GGTCGGCAGCTCATGGGTGCCTCAA
LOC_Os07g41840
OsAffx.28864.1.S1_at--542--811Chr07:25059302..25059326 (25 bp)
ATGGGTGCCTCAACAGCGGCTACAG
LOC_Os07g41840
OsAffx.28864.1.S1_at--297--2491Chr07:25059291..25059315 (25 bp)
AACAGCGGCTACAGCATGCTTGCGT
LOC_Os07g41840
OsAffx.28864.1.S1_at--496--9871Chr07:25059282..25059306 (25 bp)
TACAGCATGCTTGCGTGATCCGCAG
LOC_Os07g41840
OsAffx.28864.1.S1_at--768--8851Chr07:25059267..25059291 (25 bp)
TGATCCGCAGCAGTTGTGGGCCAAA
LOC_Os07g41840
Target Sequence 
AGGACCACGGTCCACGCGGAACAAGGCCACGGCAGCCGCTTGAGTCTGTCATCGAGGTCAGCCACATCGACGCCGTGCTC
CAGCGTGCTGCCGAGGAAGACCTCCTCCTCGGTGGTGGCGACGGTGCAGACGACGACGTCCTCTCCGCCGCGCTCTGGTT
CCAGGCTCATCGATATGATCTAGCCATTGAAGGGCGGCTGGTGGCGGGGGCCTTGATGGCTGAGGCTGATGGTGCTGGTG
GTCGGCAGCTCATGGGTGCCTCAACAGCGGCTACAGCATGCTTGCGTGATCCGCAGCAGTTGTGGGCCAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28864.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis