Browse Element(s) Details


Os.11984.1.S2_at

Description gb:CB640747
DB_XREF= gi:29635738
DB_XREF=OSJNEa16D15.f
CLONE=OSJNEa16D15
TID=Os.11984.1
CNT=14
FEA=FLmRNA
TIER=ConsEnd
STK=0
UG=Os.11984 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-207-F03, full insert sequence
FL= gb:AK067330.1 gb:AK104406.1 gb:AK106125.1 gb:AK104294.1 gb:AK104937.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4182011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g41770Os.31312.5.S1_x_at4/117+25023246..25026589retrotransposon protein, putative, unclassified
LOC_Os07g41770Os.31312.2.S1_x_at3/117+25023246..25026589retrotransposon protein, putative, unclassified
LOC_Os07g41780NANA7+25027215..25033370retrotransposon protein, putative, unclassified
LOC_Os07g41790Os.12302.1.S1_at11/117+25034930..25037385small nuclear ribonucleoprotein G, putative, expressed
LOC_Os07g41800Os.7961.1.S1_s_at11/117+25037542..25042037Peroxisome assembly protein 10, putative, expressed
LOC_Os07g41800Os.5260.1.S1_at11/117+25037542..25042037Peroxisome assembly protein 10, putative, expressed
LOC_Os07g41800Os.7961.1.S1_at2/117+25037542..25042037Peroxisome assembly protein 10, putative, expressed
LOC_Os07g41810Os.7961.1.S1_s_at11/117+25043658..25046687expressed protein
LOC_Os07g41810Os.7961.1.S1_at4/117+25043658..25046687expressed protein
LOC_Os07g41810Os.11984.1.S1_at3/117+25043658..25046687expressed protein
LOC_Os07g41820Os.11984.1.S2_at11/117+25047421..25049880expressed protein
LOC_Os07g41820Os.11984.1.S1_at11/117+25047421..25049880expressed protein
LOC_Os07g41830OsAffx.16679.1.S1_at11/117+25050161..25052503expressed protein
LOC_Os07g41840OsAffx.28864.1.S1_at11/117+25059228..25059732hypothetical protein
LOC_Os07g41850OsAffx.5596.1.S1_at11/117+25061621..25062850C1-like domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11984.1.S2_at--31--7411Chr07:25049285..25049309 (25 bp)
GTGATCTGGACTACAGCTCTTTCAG
LOC_Os07g41820
Os.11984.1.S2_at--683--10111Chr07:25049319..25049343 (25 bp)
TATGGTCTTATACTCTTATGGCAAC
LOC_Os07g41820
Os.11984.1.S2_at--943--10431Chr07:25049334..25049358 (25 bp)
TTATGGCAACCATCTACTTACTGGT
LOC_Os07g41820
Os.11984.1.S2_at--866--9531Chr07:25049346..25049370 (25 bp)
TCTACTTACTGGTTGTTGGCCTTGT
LOC_Os07g41820
Os.11984.1.S2_at--523--6611Chr07:25049360..25049384 (25 bp)
GTTGGCCTTGTTAACAATGGTGGTG
LOC_Os07g41820
Os.11984.1.S2_at--270--5491Chr07:25049389..25049413 (25 bp)
GAACAGGACTGGAGTAACTTTCGAA
LOC_Os07g41820
Os.11984.1.S2_at--430--2291Chr07:25049413..25049437 (25 bp)
AAATGAGCGATACTGCAGCAAATTC
LOC_Os07g41820
Os.11984.1.S2_at--320--9011Chr07:25049441..25049465 (25 bp)
TGAATTTGGCAATTTGCTGATGCTG
LOC_Os07g41820
Os.11984.1.S2_at--337--10571Chr07:25049692..25049716 (25 bp)
TTCTATTGCCCTTCTGTTGCTTCCT
LOC_Os07g41820
Os.11984.1.S2_at--264--3971Chr07:25049810..25049834 (25 bp)
CGTGACAGCCTGCTCAACATAGAAG
LOC_Os07g41820
Os.11984.1.S2_at--1105--9071Chr07:25049820..25049844 (25 bp)
TGCTCAACATAGAAGGTCAGACACT
LOC_Os07g41820
Target Sequence 
GTGATCTGGACTACAGCTCTTTCAGAAAAGGATGTATGGTCTTATACTCTTATGGCAACCATCTACTTACTGGTTGTTGG
CCTTGTTAACAATGGTGGTGAAAGGAACAGGACTGGAGTAACTTTCGAAAATGAGCGATACTGCAGCAAATTCTGATGAA
TTTGGCAATTTGCTGATGCTGTGGGTNTGAAAGAGCCAATCATNTAAAGCTCAACCACATTGTTTTNTCTCAGGCAGCAG
TAGCAATCCAAACAAGCAAGGTCTCGGGTTGCCTTACCAGGCAAAGTTCATGAACATCTCCAATGTTTCTCAGGCATACA
AATTTGTCAGGCATGGTGCTCTGGCCTCTGGGCACCAACCAAACAGGGCCATAGTTTTGGTCGCTTCAAACTGTAGTTTG
GTCTTCCTTCTATTGCCCTTCTGTTGCTTCCTTCAATATATTCAGAGTGAATTTGTAAATATGCTGTTTTTCTCATTAAG
AAACTTAGCATATAACAAAAGACCGGTCACATCCTTTTAAGGGTTCGTGACAGCCTGCTCAACATAGAAGGTCAGACACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11984.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis