Browse Element(s) Details


OsAffx.28971.2.S1_x_at

Description tigr:9632.m04913
TID=OsAffx.28971.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5091011/11hypothetical protein
LOC_Os08g012008/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g50880OsAffx.14360.1.S1_at11/114+29886700..29889804Phosphoribulokinase, chloroplast precursor, putative, expressed
LOC_Os04g50890Os.8400.1.S1_at11/114+29890895..29894578secretory carrier membrane protein, putative, expressed
LOC_Os04g50900OsAffx.26555.1.S1_at11/114+29896282..29896741hypothetical protein
LOC_Os04g50910OsAffx.28971.2.S1_x_at11/114+29900089..29900652hypothetical protein
LOC_Os04g50920Os.49750.1.S1_at7/114+29913406..29917192WRKY DNA binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28971.2.S1_x_at--957--8791Chr04:29900534..29900558 (25 bp)
TGTTCGCGGCGGGTAGCACCGCGTT
LOC_Os04g50910
OsAffx.28971.2.S1_x_at--682--6734Chr05:26185043..26185067 (25 bp)
GTTCTTGGCCTGAGAAACGGTGCGA
NONE
OsAffx.28971.2.S1_x_at--294--6113Chr04:26567809..26567833 (25 bp)
GAGTGCGGGTTTTATAGGTGGAGAT
NONE
OsAffx.28971.2.S1_x_at--1075--5292Chr04:26567604..26567871 (25 bp)
GAAGGAACCAACGAGGGCAGTCAAG
NONE
OsAffx.28971.2.S1_x_at--297--3972Chr08:137521..137545 (25 bp)
CGGTCAAGTGGCGACAGACGGTCAC
LOC_Os08g01200
OsAffx.28971.2.S1_x_at--246--5752Chr08:137505..137529 (25 bp)
GACGGTCACGGGAGGCAGAGGATGT
LOC_Os08g01200
OsAffx.28971.2.S1_x_at--18--5051Chr04:29900265..29900289 (25 bp)
GCAGAGGATGTGACGCCAGCTGAGA
LOC_Os04g50910
OsAffx.28971.2.S1_x_at--86--8152Chr08:137440..137464 (25 bp)
GGAAAGGAGCTCAGCTCCTTGTCGA
LOC_Os08g01200
OsAffx.28971.2.S1_x_at--163--9252Chr08:137425..137449 (25 bp)
TCCTTGTCGATTTTGGACGAGGAGA
LOC_Os08g01200
OsAffx.28971.2.S1_x_at--712--7152Chr08:137359..137383 (25 bp)
GTCTTTGGACGCGAGCGCACAGAGC
LOC_Os08g01200
OsAffx.28971.2.S1_x_at--322--3672Chr08:137357..137381 (25 bp)
CTTTGGACGCGAGCGCACAGAGCAG
LOC_Os08g01200
Target Sequence 
TGTTCGCGGCGGGTAGCACCGCGTTGGCCGAGCGGCGACGCAAGGCGGCGAGGAAGGGAACACCAGCGACGGAGGAGGCC
GCGGCGTTGGGCGAGCGTTCTTGGCCTGAGAAACGGTGCGATGGTGGAGAGGCTAGGAGCCGAACGAGGGAGGGGAGTGC
GGGTTTTATAGGTGGAGATGGGGCTTCGAGGGGAAGGAACCAACGAGGGCAGTCAAGGGGAGCTCGGCTGGCGGCCTCGC
GGTCAAGTGGCGACAGACGGTCACGGGAGGCAGAGGATGTGACGCCAGCTGAGAGGGGGAAAAGCAAAAAAAGGGGGAGG
GGAAAGGAGCTCAGCTCCTTGTCGATTTTGGACGAGGAGAGGGAGGATGGAGCGCGTGGGAGAGAGAGGCGCTGCCTCCG
CGTCTTTGGACGCGAGCGCACAGAGCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28971.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis