Browse Element(s) Details


OsAffx.29071.1.S1_at

Description tigr:9636.m00637
TID=OsAffx.29071.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0702011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g07010OsAffx.16865.1.S1_at11/118+3922402..3927219ABC-2 type transporter family protein, expressed
LOC_Os08g07010OsAffx.16865.1.S1_x_at11/118+3922402..3927219ABC-2 type transporter family protein, expressed
LOC_Os08g07020OsAffx.29071.1.S1_at11/118+3930047..3930877hypothetical protein
LOC_Os08g07030OsAffx.16866.1.S1_at11/118+3933836..3934069hypothetical protein
LOC_Os08g07040OsAffx.16867.1.S1_at11/118+3934777..3938452expressed protein
LOC_Os08g07050NANA8+3939587..3940141hypothetical protein
LOC_Os08g07060Os.51132.1.S1_at11/118+3942695..3944788expressed protein
LOC_Os08g07070OsAffx.5729.1.S1_at11/118+3945013..3945976expressed protein
LOC_Os08g07080Os.26820.1.A1_s_at11/118+3954152..3959294Terpene synthase family, metal binding domain containing protein, expressed
LOC_Os08g07080Os.26820.1.A1_at11/118+3954152..3959294Terpene synthase family, metal binding domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29071.1.S1_at--261--6311Chr08:3930421..3930445 (25 bp)
GATGAGAGCCTGACGCGGCGGCAGA
LOC_Os08g07020
OsAffx.29071.1.S1_at--575--10691Chr08:3930321..3930345 (25 bp)
TTGCGGCGCGGCCAAACCTAGCGTC
LOC_Os08g07020
OsAffx.29071.1.S1_at--1036--4192Chr02:19306861..19306951 (24 bp)
CCGCCGCGGCGTGAATTTATAGGCG
NONE
OsAffx.29071.1.S1_at--689--10111Chr08:3930278..3930302 (25 bp)
TATAGGCGGGAAGCGGGTCCATCAC
LOC_Os08g07020
OsAffx.29071.1.S1_at--771--7611Chr08:3930271..3930295 (25 bp)
GGGAAGCGGGTCCATCACTCCAAGC
LOC_Os08g07020
OsAffx.29071.1.S1_at--275--8651Chr08:3930195..3930219 (25 bp)
TGGGCCGAGGCCCACATGCATTGTT
LOC_Os08g07020
OsAffx.29071.1.S1_at--672--4351Chr08:3930184..3930208 (25 bp)
CCACATGCATTGTTCACACTTCAGA
LOC_Os08g07020
OsAffx.29071.1.S1_at--824--6751Chr08:3930173..3930197 (25 bp)
GTTCACACTTCAGAGAGCTTCTAGA
LOC_Os08g07020
OsAffx.29071.1.S1_at--1078--5351Chr08:3930142..3930166 (25 bp)
GAAGACACAAGACTACCTCAAAGGA
LOC_Os08g07020
OsAffx.29071.1.S1_at--1037--2991Chr08:3930110..3930134 (25 bp)
AATGAGAGCCTCAAGTCCTGTGATC
LOC_Os08g07020
OsAffx.29071.1.S1_at--582--1131Chr08:3930097..3930121 (25 bp)
AGTCCTGTGATCTTGCAATCAAAAG
LOC_Os08g07020
Target Sequence 
GATGAGAGCCTGACGCGGCGGCAGACGGAGGGGGACGCCGGCGTCGGCGTGGTCGACCTCGCCATCGGTCCAAGCGCGGC
GTGGCGTGGTGGCGCTTCGGTTGCGGCGCGGCCAAACCTAGCGTCGCCGCCGCGGCGTGAATTTATAGGCGGGAAGCGGG
TCCATCACTCCAAGCCCAAGCAAGTGGTCTCTTCTTCTTCTTCGGTGTGGCTGCCTTTGTGGGCCCTGGGCCGAGGCCCA
CATGCATTGTTCACACTTCAGAGAGCTTCTAGAAGCATTGAAGACACAAGACTACCTCAAAGGAGGAGAATAATGAGAGC
CTCAAGTCCTGTGATCTTGCAATCAAAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29071.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis