Browse Element(s) Details


Os.26820.1.A1_s_at

Description gb:CB621159
DB_XREF= gi:29616147
DB_XREF=OSIIEa06N14.r
CLONE=OSIIEa06N14
TID=Os.26820.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.26820 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_188067.1 (A.thaliana) terpene synthase-related protein, putative (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0708011/11Terpene synthase family, metal binding domain containing protein, expressed
LOC_Os08g071002/11Terpene synthase, N-terminal domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g07020OsAffx.29071.1.S1_at11/118+3930047..3930877hypothetical protein
LOC_Os08g07030OsAffx.16866.1.S1_at11/118+3933836..3934069hypothetical protein
LOC_Os08g07040OsAffx.16867.1.S1_at11/118+3934777..3938452expressed protein
LOC_Os08g07050NANA8+3939587..3940141hypothetical protein
LOC_Os08g07060Os.51132.1.S1_at11/118+3942695..3944788expressed protein
LOC_Os08g07070OsAffx.5729.1.S1_at11/118+3945013..3945976expressed protein
LOC_Os08g07080Os.26820.1.A1_s_at11/118+3954152..3959294Terpene synthase family, metal binding domain containing protein, expressed
LOC_Os08g07080Os.26820.1.A1_at11/118+3954152..3959294Terpene synthase family, metal binding domain containing protein, expressed
LOC_Os08g07090OsAffx.5731.1.S1_at10/118+3960134..3963366hypothetical protein
LOC_Os08g07090OsAffx.22759.2.S1_at1/118+3960134..3963366hypothetical protein
LOC_Os08g07100Os.26849.1.S1_at9/118+3965901..3970988Terpene synthase, N-terminal domain containing protein, expressed
LOC_Os08g07100Os.26820.1.A1_s_at2/118+3965901..3970988Terpene synthase, N-terminal domain containing protein, expressed
LOC_Os08g07109NANA8+3976967..3978980NA
LOC_Os08g07120OsAffx.29072.1.S1_at10/118+3979323..3982448Terpene synthase family, metal binding domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0016099biological_processmonoterpenoid biosynthesis
GO:0016106biological_processsesquiterpenoid biosynthesis
GO:0042408molecular_functionmyrcene/(E)-beta-ocimene synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26820.1.A1_s_at--512--10691Chr08:3958612..3958636 (25 bp)
TTGCCTTTTGACTTATCCAGAACTT
LOC_Os08g07080
Os.26820.1.A1_s_at--525--792Chr08:3970310..3970334 (25 bp)
ATGTGTACGGCTCTCAAATGATATT
LOC_Os08g07100
Os.26820.1.A1_s_at--566--6512Chr08:3970329..3970465 (25 bp)
GATATTGCTTCAACAAAGCGTGAAC
LOC_Os08g07100
Os.26820.1.A1_s_at--1160--3511Chr08:3958820..3958844 (25 bp)
CATGCTTCTACAATTCAGAGTTATA
LOC_Os08g07080
Os.26820.1.A1_s_at--1132--1331Chr08:3958836..3958860 (25 bp)
AGAGTTATATGCTCCAACATGGTGC
LOC_Os08g07080
Os.26820.1.A1_s_at--612--4771Chr08:3958846..3958870 (25 bp)
GCTCCAACATGGTGCAACAGCGCAT
LOC_Os08g07080
Os.26820.1.A1_s_at--1088--2471Chr08:3958942..3958966 (25 bp)
AACAGACCTGCAACCAAAAATCGTG
LOC_Os08g07080
Os.26820.1.A1_s_at--227--2571Chr08:3958972..3958996 (25 bp)
AACGGTTATTGATTTTGCGCGAACG
LOC_Os08g07080
Os.26820.1.A1_s_at--251--9151Chr08:3958987..3959011 (25 bp)
TGCGCGAACGGGTGATTATATGTAC
LOC_Os08g07080
Os.26820.1.A1_s_at--446--7951Chr08:3959050..3959074 (25 bp)
GGATATGATAGCATCGCTCTATATG
LOC_Os08g07080
Os.26820.1.A1_s_at--790--4111Chr08:3959064..3959088 (25 bp)
CGCTCTATATGGAGCCGTATAACAT
LOC_Os08g07080
Target Sequence 
TTGCCTTTTGACTTATCCAGAACTTCTTAAGTCTTTCNCAACATGTGTACGGCTCTCAAATGATATTGCTTCAACAAAGC
GTGAACAAGCAGGGGACCNCCACCATGCTTCTACAATTCAGAGTTATATGCTCCAACATGGTGCAACAGCGCATGAAGCA
TGCGTTGGGATAAAGGAGTTGATAGAAGACTCATGGAAGGATATGATGAAAGAATNCCTTACACCAACAGACCTGCAACC
AAAAATCGTGGCAAGAACGGTTATTGATTTTGCGCGAACGGGTGATTATATGTACAAGCAAGTTGATTCATTCANTATTT
CACATACAATCAAGGATATGATAGCATCGCTCTATATGGAGCCGTATAACAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26820.1.A1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis