Browse Element(s) Details


Os.26849.1.S1_at

Description gb:AK108761.1
DB_XREF= gi:32993970
TID=Os.26849.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.26849 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-150-G06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-150-G06, full insert sequence.
FL= gb:AK108761.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g071009/11Terpene synthase, N-terminal domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g07060Os.51132.1.S1_at11/118+3942695..3944788expressed protein
LOC_Os08g07070OsAffx.5729.1.S1_at11/118+3945013..3945976expressed protein
LOC_Os08g07080Os.26820.1.A1_s_at11/118+3954152..3959294Terpene synthase family, metal binding domain containing protein, expressed
LOC_Os08g07080Os.26820.1.A1_at11/118+3954152..3959294Terpene synthase family, metal binding domain containing protein, expressed
LOC_Os08g07090OsAffx.5731.1.S1_at10/118+3960134..3963366hypothetical protein
LOC_Os08g07090OsAffx.22759.2.S1_at1/118+3960134..3963366hypothetical protein
LOC_Os08g07100Os.26849.1.S1_at9/118+3965901..3970988Terpene synthase, N-terminal domain containing protein, expressed
LOC_Os08g07100Os.26820.1.A1_s_at2/118+3965901..3970988Terpene synthase, N-terminal domain containing protein, expressed
LOC_Os08g07109NANA8+3976967..3978980NA
LOC_Os08g07120OsAffx.29072.1.S1_at10/118+3979323..3982448Terpene synthase family, metal binding domain containing protein
LOC_Os08g07130NANA8+3985008..3991163transposon protein, putative, unclassified
LOC_Os08g07140NANA8+3991805..3995041transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0016099biological_processmonoterpenoid biosynthesis
GO:0042408molecular_functionmyrcene/(E)-beta-ocimene synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26849.1.S1_at--309--2831Chr08:3969211..3969235 (25 bp)
AAGTTATCGAGTGCTTTATTTCAAA
LOC_Os08g07100
Os.26849.1.S1_at--655--5851Chr08:3970474..3970498 (25 bp)
GACCACTATGCTTCCACAATTCAGT
LOC_Os08g07100
Os.26849.1.S1_at--1084--3291Chr08:3970488..3970512 (25 bp)
CACAATTCAGTGTTACATGCTGCAG
LOC_Os08g07100
Os.26849.1.S1_at--828--611Chr08:3970504..3970528 (25 bp)
ATGCTGCAGCATGGTACAACAATAC
LOC_Os08g07100
Os.26849.1.S1_at--432--1391Chr08:3970587..3970611 (25 bp)
AGAATACCTTGCACCAACAAACCTT
LOC_Os08g07100
Os.26849.1.S1_at--489--2451Chr08:3970602..3970626 (25 bp)
AACAAACCTTCAGCCAAAAATCGTG
LOC_Os08g07100
Os.26849.1.S1_at--29--1491Chr08:3970673..3970697 (25 bp)
AGCAAGCAGATTCATTCACCTTTTC
LOC_Os08g07100
Os.26849.1.S1_at--154--8871Chr08:3970841..3970865 (25 bp)
TGATGGTGGCTGCTGATCATGAAAC
LOC_Os08g07100
Os.26849.1.S1_at--674--3531Chr08:3970866..3970890 (25 bp)
CATCGTTAGTTAAGCTTCATTAGAA
LOC_Os08g07100
Os.26849.1.S1_at--524--10211NONE
TATTATGTGCAATATTCTCCCCGCC
NONE
Os.26849.1.S1_at--708--10211NONE
TATTCTCCCCGCCAGTAATAAGATA
NONE
Target Sequence 
AAGTTATCGAGTGCTTTATTTCAAAGAGCTGCGTGAACAAGCAGGGGACCACTATGCTTCCACAATTCAGTGTTACATGC
TGCAGCATGGTACAACAATACATGAAGCATGCATTGGGATAAAGGAGTTGATAGAAGATTCGTGGAAGGATATGATGAAA
GAATACCTTGCACCAACAAACCTTCAGCCAAAAATCGTGGCAAGAACAGTTATTGATTTTGCACGAACTGGGGATTATAT
ATACAAGCAAGCAGATTCATTCACCTTTTCNCATACAATCAAGGATATGATAGCATCNCTTTACGTTGAGCCATATAGCA
TTTAAATCNCCNCNNGCATTTACATTATAAATATTATATTATCAAGTAAGGAGTTTCACAATTGTAACAAATATTAATTA
GTTTTCAATAATGTGATGGTGGCTGCTGATCATGAAACNCATCGTTAGTTAAGCTTCATTAGAAAGTTTCCANGGTTAAA
GAATTGTTTTTCCTTATCTNGTTGTCACAGATATTATGTGCAATATTCTCCCCGCCAGTAATAAGATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26849.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis