Browse Element(s) Details


OsAffx.29072.1.S1_at

Description tigr:9636.m00647
TID=OsAffx.29072.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Terpene synthase family, metal binding domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0712010/11Terpene synthase family, metal binding domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g07080Os.26820.1.A1_s_at11/118+3954152..3959294Terpene synthase family, metal binding domain containing protein, expressed
LOC_Os08g07080Os.26820.1.A1_at11/118+3954152..3959294Terpene synthase family, metal binding domain containing protein, expressed
LOC_Os08g07090OsAffx.5731.1.S1_at10/118+3960134..3963366hypothetical protein
LOC_Os08g07090OsAffx.22759.2.S1_at1/118+3960134..3963366hypothetical protein
LOC_Os08g07100Os.26849.1.S1_at9/118+3965901..3970988Terpene synthase, N-terminal domain containing protein, expressed
LOC_Os08g07100Os.26820.1.A1_s_at2/118+3965901..3970988Terpene synthase, N-terminal domain containing protein, expressed
LOC_Os08g07109NANA8+3976967..3978980NA
LOC_Os08g07120OsAffx.29072.1.S1_at10/118+3979323..3982448Terpene synthase family, metal binding domain containing protein
LOC_Os08g07130NANA8+3985008..3991163transposon protein, putative, unclassified
LOC_Os08g07140NANA8+3991805..3995041transposon protein, putative, unclassified
LOC_Os08g07150OsAffx.29073.1.S1_x_at11/118+3997993..3998311hypothetical protein
LOC_Os08g07160OsAffx.16869.1.S1_at11/118+3999072..3999344hypothetical protein
LOC_Os08g07170NANA8+4005027..4006931Cytokinin-O-glucosyltransferase 2, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29072.1.S1_at--877--1111Chr08:3980723..3980747 (25 bp)
AGTGCAATAGTGAGACTTCCAGAAT
LOC_Os08g07120
OsAffx.29072.1.S1_at--1062--10131Chr08:3980834..3980858 (25 bp)
TATCTCAAAGAGCTGGCAAGTATTT
LOC_Os08g07120
OsAffx.29072.1.S1_at--1154--7851Chr08:3981687..3981711 (25 bp)
GGTTAGTTCAAGGATACTCACAGGA
LOC_Os08g07120
OsAffx.29072.1.S1_at--17--8371Chr08:3981720..3981744 (25 bp)
GGCGTGATGAACATTATATCCCAAA
LOC_Os08g07120
OsAffx.29072.1.S1_at--953--10231Chr08:3981760..3981784 (25 bp)
TTTGGAGGTTTCAAGAGCGACTGTT
LOC_Os08g07120
OsAffx.29072.1.S1_at--6--4611Chr08:3981776..3981800 (25 bp)
GCGACTGTTGGAGCTTTTGAGATAG
LOC_Os08g07120
OsAffx.29072.1.S1_at--1127--6031Chr08:3981794..3981817 (24 bp)
GAGATAGCATGTGCTTCCTTTGTGC
LOC_Os08g07120
OsAffx.29072.1.S1_at--1072--7311NONE
GTGCTTCCTTTGTGCGTGAGCAAAA
NONE
OsAffx.29072.1.S1_at--32--7651Chr08:3982174..3982198 (25 bp)
GGGAGCACCATGTTTCTACTGTGCA
LOC_Os08g07120
OsAffx.29072.1.S1_at--1153--6631Chr08:3982341..3982365 (25 bp)
GTTGATCTTGCACGAACAGCCGATT
LOC_Os08g07120
OsAffx.29072.1.S1_at--214--2471Chr08:3982379..3982403 (25 bp)
AACAGACTCATACACTTTTGCGAAT
LOC_Os08g07120
Target Sequence 
AGTGCAATAGTGAGACTTCCAGAATATATGAAGTGTTTTTACTTGTATTTATTGAAGACATTTGACTTGATTGAAGAGGA
ACTTGGAACAAGTAACAGTTATCGTGTATTTTATCTCAAAGAGCTGGCAAGTATTTATGCCATTAAACTTTTAAAGAGGT
TAGTTCAAGGATACTCACAGGAGATTAAATGGCGTGATGAACATTATATCCCAAAAACAGTCGATGAACATTTGGAGGTT
TCAAGAGCGACTGTTGGAGCTTTTGAGATAGCATGTGCTTCCTTTGTGCGTGAGCAAAAAGGGGAGCACCATGTTTCTAC
TGTGCAATGTTACATGTTTCAGCATGGAACAACAATGCATGATGCATGTGTGAAGATAAAGGAGTTGATTGAAGATTCAT
GGAAGGATATAGTAAAAGAATACCTTACACTACCAACAGAACAACCAAAAATAGTGGCTGAGACAATTGTTGATCTTGCA
CGAACAGCCGATTACATGTATAAGAAAACAGACTCATACACTTTTGCGAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29072.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis