Browse Element(s) Details


OsAffx.29073.1.S1_x_at

Description tigr:9630.m02339
TID=OsAffx.29073.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2503011/11hypothetical protein
LOC_Os08g0715011/11hypothetical protein
LOC_Os11g1713910/11
LOC_Os12g104408/11hypothetical protein
LOC_Os04g160108/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g225408/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g168244/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g334903/11hypothetical protein
LOC_Os03g323803/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g197501/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g25000OsAffx.31174.5.S1_x_at3/112+14491231..14492940hypothetical protein
LOC_Os02g25000OsAffx.31174.4.S1_x_at2/112+14491231..14492940hypothetical protein
LOC_Os02g25010OsAffx.12182.1.S1_at11/112+14494666..14496124hypothetical protein
LOC_Os02g25020OsAffx.24414.1.S1_at11/112+14502323..14503273expressed protein
LOC_Os02g25030OsAffx.29073.1.S1_x_at11/112+14508321..14508554hypothetical protein
LOC_Os02g25040Os.46012.2.S1_x_at8/112+14511623..14516990retrotransposon protein, putative, unclassified
LOC_Os02g25040Os.46012.3.S1_x_at6/112+14511623..14516990retrotransposon protein, putative, unclassified
LOC_Os02g25040Os.27088.1.A1_x_at4/112+14511623..14516990retrotransposon protein, putative, unclassified
LOC_Os02g25040Os.54691.1.S1_x_at1/112+14511623..14516990retrotransposon protein, putative, unclassified
LOC_Os02g25050NANA2+14520446..14521781hypothetical protein
LOC_Os02g25060Os.7259.1.S1_at10/112+14523793..14531633C2 domain-containing protein, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29073.1.S1_x_at--193--61711Chr08:3998026..3998050 (25 bp)
GAGGTTGAAGATGCCACTGTAGCGA
LOC_Os08g07150
OsAffx.29073.1.S1_x_at--83--6677Chr08:3998029..3998053 (25 bp)
GTTGAAGATGCCACTGTAGCGACAG
LOC_Os08g07150
OsAffx.29073.1.S1_x_at--694--5357Chr08:3998032..3998056 (25 bp)
GAAGATGCCACTGTAGCGACAGGGA
LOC_Os08g07150
OsAffx.29073.1.S1_x_at--143--47329Chr12:20181778..20181802 (25 bp)
GCTGGGCTTCTACTTCTTGGCCCGA
NONE
OsAffx.29073.1.S1_x_at--756--36529Chr12:20181784..20181808 (25 bp)
CTTCTACTTCTTGGCCCGATTGAAA
NONE
OsAffx.29073.1.S1_x_at--23--20529Chr12:20181789..20181838 (25 bp)
ACTTCTTGGCCCGATTGAAAGAGGG
NONE
OsAffx.29073.1.S1_x_at--1014--105319Chr11:18342255..18342279 (25 bp)
TTCTTGGCCCGATTGAAAGAGGGAC
NONE
OsAffx.29073.1.S1_x_at--66--95918Chr11:18342256..18342280 (25 bp)
TCTTGGCCCGATTGAAAGAGGGACA
NONE
OsAffx.29073.1.S1_x_at--412--108717Chr11:18342258..18342282 (25 bp)
TTGGCCCGATTGAAAGAGGGACACA
NONE
OsAffx.29073.1.S1_x_at--1100--45117Chr11:18342261..18342285 (25 bp)
GCCCGATTGAAAGAGGGACACAAAG
NONE
OsAffx.29073.1.S1_x_at--507--55724Chr12:4408587..4408607 (21 bp)
GAAAGAGGGACACAAAGCAGACTTC
NONE
Target Sequence 
GAGGTTGAAGATGCCACTGTAGCGACAGGGANGANAANTAGACTTCNGGCTGGGCTTCTACTTCTTGGCCCGATTGAAAG
AGGGACACAAAGCAGACTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29073.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis