Browse Element(s) Details


OsAffx.24414.1.S1_at

Description tigr:9630.m02338
TID=OsAffx.24414.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to probable AT-hook DNA-binding protein (imported) - Arabidopsis thaliana
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2502011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g24980OsAffx.26046.1.S1_at1/112+14477072..14478682hypothetical protein
LOC_Os02g24990OsAffx.13882.2.S1_at2/112+14480500..14482427retrotransposon protein, putative, unclassified
LOC_Os02g25000OsAffx.31174.5.S1_x_at3/112+14491231..14492940hypothetical protein
LOC_Os02g25000OsAffx.31174.4.S1_x_at2/112+14491231..14492940hypothetical protein
LOC_Os02g25010OsAffx.12182.1.S1_at11/112+14494666..14496124hypothetical protein
LOC_Os02g25020OsAffx.24414.1.S1_at11/112+14502323..14503273expressed protein
LOC_Os02g25030OsAffx.29073.1.S1_x_at11/112+14508321..14508554hypothetical protein
LOC_Os02g25040Os.46012.2.S1_x_at8/112+14511623..14516990retrotransposon protein, putative, unclassified
LOC_Os02g25040Os.46012.3.S1_x_at6/112+14511623..14516990retrotransposon protein, putative, unclassified
LOC_Os02g25040Os.27088.1.A1_x_at4/112+14511623..14516990retrotransposon protein, putative, unclassified
LOC_Os02g25040Os.54691.1.S1_x_at1/112+14511623..14516990retrotransposon protein, putative, unclassified
LOC_Os02g25050NANA2+14520446..14521781hypothetical protein
LOC_Os02g25060Os.7259.1.S1_at10/112+14523793..14531633C2 domain-containing protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24414.1.S1_at--476--2171Chr02:14502687..14502711 (25 bp)
ACACGCTCCGGACGCACGTCATGGA
LOC_Os02g25020
OsAffx.24414.1.S1_at--751--5671Chr02:14502728..14502752 (25 bp)
GACATCTCCGAGAGCATCACCACGT
LOC_Os02g25020
OsAffx.24414.1.S1_at--799--9391Chr02:14502846..14502870 (25 bp)
TCGTTGCGCTCCACGGCCGGTTCGA
LOC_Os02g25020
OsAffx.24414.1.S1_at--508--3891Chr02:14503005..14503029 (25 bp)
CTGTGGTGATAATGGCGGCGTCTTT
LOC_Os02g25020
OsAffx.24414.1.S1_at--1096--4011Chr02:14503023..14503047 (25 bp)
CGTCTTTTGCGAACGCGGTGTACGA
LOC_Os02g25020
OsAffx.24414.1.S1_at--938--1851Chr02:14503065..14503089 (25 bp)
ACGACGAGCTACTGGCGGCTCAAGG
LOC_Os02g25020
OsAffx.24414.1.S1_at--960--4831Chr02:14503082..14503106 (25 bp)
GCTCAAGGGCAAGCCGACAGCGCTG
LOC_Os02g25020
OsAffx.24414.1.S1_at--693--1671Chr02:14503093..14503117 (25 bp)
AGCCGACAGCGCTGGGTTGCTCGCC
LOC_Os02g25020
OsAffx.24414.1.S1_at--71--6371Chr02:14503157..14503181 (25 bp)
GATCCAAGCCTCTTCCAAGGACTAC
LOC_Os02g25020
OsAffx.24414.1.S1_at--354--2371Chr02:14503186..14503210 (25 bp)
AAACCTACTCGGAAACGTGCAGCTG
LOC_Os02g25020
OsAffx.24414.1.S1_at--1090--1651Chr02:14503219..14503243 (25 bp)
AGCCGCCTACGGATGGAACCCTGGA
LOC_Os02g25020
Target Sequence 
ACACGCTCCGGACGCACGTCATGGAGGTGGCCGGCGGCTGCGACATCTCCGAGAGCATCACCACGTTCGCGCGACGCCGG
CAGCGCGGGGTTTGCGTGCTCAGCGGCGCCGGCACCGTCACTAACGTCACGCTGCGGCAGCCCGCATCGCAGGGAGCGGT
CGTTGCGCTCCACGGCCGGTTCGAGATACTCTCCCTCTCCGGCTCCTTCCTCCCGCCGCCCGCCCCGCCGGAGGCCACGG
GGCTCACCGTCTACCTGGCCGGAGGCCAGGGCCAGGTCGTGGGCGGCAGCGTCGTCGGCGCGCTGACCGCGGCTGGGCCT
GTGGTGATAATGGCGGCGTCTTTTGCGAACGCGGTGTACGAGCGGCTGCCGTTGGAGGACGACGAGCTACTGGCGGCTCA
AGGGCAAGCCGACAGCGCTGGGTTGCTCGCCGCGGGGCAGCAAGCGGCGCAGCTCGCCGGCGGGGCCGTCGATCCAAGCC
TCTTCCAAGGACTACCACCAAACCTACTCGGAAACGTGCAGCTGCCGCCGGAAGCCGCCTACGGATGGAACCCTGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24414.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis