Browse Element(s) Details


OsAffx.12182.1.S1_at

Description tigr:9630.m02337
TID=OsAffx.12182.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2501011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g24970NANA2+14468822..14472285retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g24980OsAffx.26046.1.S1_at1/112+14477072..14478682hypothetical protein
LOC_Os02g24990OsAffx.13882.2.S1_at2/112+14480500..14482427retrotransposon protein, putative, unclassified
LOC_Os02g25000OsAffx.31174.5.S1_x_at3/112+14491231..14492940hypothetical protein
LOC_Os02g25000OsAffx.31174.4.S1_x_at2/112+14491231..14492940hypothetical protein
LOC_Os02g25010OsAffx.12182.1.S1_at11/112+14494666..14496124hypothetical protein
LOC_Os02g25020OsAffx.24414.1.S1_at11/112+14502323..14503273expressed protein
LOC_Os02g25030OsAffx.29073.1.S1_x_at11/112+14508321..14508554hypothetical protein
LOC_Os02g25040Os.46012.2.S1_x_at8/112+14511623..14516990retrotransposon protein, putative, unclassified
LOC_Os02g25040Os.46012.3.S1_x_at6/112+14511623..14516990retrotransposon protein, putative, unclassified
LOC_Os02g25040Os.27088.1.A1_x_at4/112+14511623..14516990retrotransposon protein, putative, unclassified
LOC_Os02g25040Os.54691.1.S1_x_at1/112+14511623..14516990retrotransposon protein, putative, unclassified
LOC_Os02g25050NANA2+14520446..14521781hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12182.1.S1_at--758--5335Chr07:14138804..14138827 (24 bp)
GAAGTCTACATGCTAACCATATATT
NONE
OsAffx.12182.1.S1_at--92--2653Chr02:14495332..14495356 (25 bp)
AACCATATATTTGTTACTGCATAAA
LOC_Os02g25010
OsAffx.12182.1.S1_at--92--7077Chr10:4273114..4273137 (24 bp)
GTAAGACATGGTGTTACTGCACGAA
NONE
OsAffx.12182.1.S1_at--1097--1391Chr02:14495969..14495993 (25 bp)
AGACATGGTGTTACTGCACGAAGAA
LOC_Os02g25010
OsAffx.12182.1.S1_at--1029--9011Chr02:14495983..14496007 (25 bp)
TGCACGAAGAACATCGCGTTACTAC
LOC_Os02g25010
OsAffx.12182.1.S1_at--381--5371Chr02:14495988..14496012 (25 bp)
GAAGAACATCGCGTTACTACGTTGT
LOC_Os02g25010
OsAffx.12182.1.S1_at--173--2514Chr10:4273140..4273164 (25 bp)
AACATCGCGTTACTACGTTGTTCTG
NONE
OsAffx.12182.1.S1_at--682--534Chr10:4273143..4273167 (25 bp)
ATCGCGTTACTACGTTGTTCTGAGA
NONE
OsAffx.12182.1.S1_at--261--4636Chr10:4273146..4273170 (25 bp)
GCGTTACTACGTTGTTCTGAGACGA
NONE
OsAffx.12182.1.S1_at--659--9895Chr10:4273150..4273173 (24 bp)
TACTACGTTGTTCTGAGACGAGAGC
NONE
OsAffx.12182.1.S1_at--9--4053Chr02:14496007..14496031 (25 bp)
CGTTGTTCTGAGACGAGAGCTGAGA
LOC_Os02g25010
Target Sequence 
GAAGTCTACATGCTAACCATATATTTGTTACTGCATAAAAATCAAGTAAGACATGGTGTTACTGCACGAAGAACATCGCG
TTACTACGTTGTTCTGAGACGAGAGCTGAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12182.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis