Browse Element(s) Details


Os.7259.1.S1_at

Description gb:AK064509.1
DB_XREF= gi:32974527
TID=Os.7259.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.7259 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-111-E04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-111-E04, full insert sequence.
FL= gb:AK064509.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2506010/11C2 domain-containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g25020OsAffx.24414.1.S1_at11/112+14502323..14503273expressed protein
LOC_Os02g25030OsAffx.29073.1.S1_x_at11/112+14508321..14508554hypothetical protein
LOC_Os02g25040Os.46012.2.S1_x_at8/112+14511623..14516990retrotransposon protein, putative, unclassified
LOC_Os02g25040Os.46012.3.S1_x_at6/112+14511623..14516990retrotransposon protein, putative, unclassified
LOC_Os02g25040Os.27088.1.A1_x_at4/112+14511623..14516990retrotransposon protein, putative, unclassified
LOC_Os02g25040Os.54691.1.S1_x_at1/112+14511623..14516990retrotransposon protein, putative, unclassified
LOC_Os02g25050NANA2+14520446..14521781hypothetical protein
LOC_Os02g25060Os.7259.1.S1_at10/112+14523793..14531633C2 domain-containing protein, putative, expressed
LOC_Os02g25070OsAffx.2738.1.S1_at11/112+14548326..14549539hypothetical protein
LOC_Os02g25080Os.17815.1.S1_at11/112+14551226..14553252expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7259.1.S1_at--101--7511Chr02:14525813..14525837 (25 bp)
GTGGTTTGCTGGTAGTTATCGTTCA
LOC_Os02g25060
Os.7259.1.S1_at--92--5571Chr02:14525768..14525792 (25 bp)
GAAAGCACCACACTAATCCATATGT
LOC_Os02g25060
Os.7259.1.S1_at--200--511Chr02:14525558..14525582 (25 bp)
ATCGTGATCCACGTTGGGAGCAAGA
LOC_Os02g25060
Os.7259.1.S1_at--743--1191Chr02:14525528..14525552 (25 bp)
AGTTTGTCTGCGAGGAACCACCCAT
LOC_Os02g25060
Os.7259.1.S1_at--700--5331Chr02:14525484..14525508 (25 bp)
GAAGTCATTAGCAGACCACCAAGCA
LOC_Os02g25060
Os.7259.1.S1_at--1159--2691NONE
AAGCATCGGTATACATTCCAAGGAA
NONE
Os.7259.1.S1_at--876--5511Chr02:14524128..14524152 (25 bp)
GAAAATCTTGGCTATGTTGTCATAA
LOC_Os02g25060
Os.7259.1.S1_at--122--5491Chr02:14524010..14524034 (25 bp)
GAACATCTTAGAACTCACGGGCTGA
LOC_Os02g25060
Os.7259.1.S1_at--277--5471Chr02:14524000..14524024 (25 bp)
GAACTCACGGGCTGAAATCTTGTAA
LOC_Os02g25060
Os.7259.1.S1_at--346--2191Chr02:14523951..14523975 (25 bp)
ACACTTGTATGTATCATTTGGCAGA
LOC_Os02g25060
Os.7259.1.S1_at--1104--191Chr02:14523936..14523960 (25 bp)
ATTTGGCAGACATATCTTACCTTCT
LOC_Os02g25060
Target Sequence 
GTGGTTTGCTGGTAGTTATCGTTCATGAAGCACAAGACGTTGAAGGAAAGCACCACACTAATCCATATGTAAGAATTGTG
TTTAGAGGTGAAGAAAGGAAGACCAAGCATATTAAGAAGAATCGTGATCCACGTTGGGAGCAAGAATTTCAGTTTGTCTG
CGAGGAACCACCCATAAATGATAAAATGCAAATTGAAGTCATTAGCAGACCACCAAGCATCGGTATACATTCCAAGGAAA
ATCTTGGCTATGTTGTCATAAGTCTTGCAGATGTTATAAACAATAAGAGGATCAATGAGAAATATCATCTAATTGACTCG
AAAAATGGCCGCATCCAGTTGGAATTGCAGTGGAGAACATCTTAGAACTCACGGGCTGAAATCTTGTAAAGTTTCTTGTT
TAGAATGCTTTCTACACTTGTATGTATCATTTGGCAGACATATCTTACCTTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7259.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis