Browse Element(s) Details


OsAffx.2738.1.S1_at

Description tigr:9630.m02342
TID=OsAffx.2738.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2507011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g25060Os.7259.1.S1_at10/112+14523793..14531633C2 domain-containing protein, putative, expressed
LOC_Os02g25070OsAffx.2738.1.S1_at11/112+14548326..14549539hypothetical protein
LOC_Os02g25080Os.17815.1.S1_at11/112+14551226..14553252expressed protein
LOC_Os02g25090OsAffx.22699.1.S1_x_at3/112+14561324..14565023retrotransposon protein, putative, unclassified
LOC_Os02g25090OsAffx.18275.1.S1_x_at1/112+14561324..14565023retrotransposon protein, putative, unclassified
LOC_Os02g25100NANA2+14565482..14567715retrotransposon protein, putative, unclassified
LOC_Os02g25110NANA2+14568248..14570920hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2738.1.S1_at--559--2211Chr02:14548979..14549003 (25 bp)
ACAAGCATTGTTAGACCTCGCGCTC
LOC_Os02g25070
OsAffx.2738.1.S1_at--697--4571Chr02:14548998..14549022 (25 bp)
GCGCTCCTACTCATGTATTGGCAAG
LOC_Os02g25070
OsAffx.2738.1.S1_at--289--10211Chr02:14549030..14549054 (25 bp)
TATTTCTATCCTTTCATTTCAGCTG
LOC_Os02g25070
OsAffx.2738.1.S1_at--188--2871Chr02:14549125..14549149 (25 bp)
AAGTGAACGTACTACTTCCGCGATC
LOC_Os02g25070
OsAffx.2738.1.S1_at--184--251Chr02:14549216..14549240 (25 bp)
ATATCACAAATTCCTGGCCATCTTT
LOC_Os02g25070
OsAffx.2738.1.S1_at--122--451Chr02:14549251..14549275 (25 bp)
ATCTTTCACCCATACTTCGCAGAAG
LOC_Os02g25070
OsAffx.2738.1.S1_at--684--6311Chr02:14549363..14549387 (25 bp)
GATGACTTGAGAGCACGACTGTTAG
LOC_Os02g25070
OsAffx.2738.1.S1_at--451--6771Chr02:14549383..14549407 (25 bp)
GTTAGACATAGCTGATCGACTGGGT
LOC_Os02g25070
OsAffx.2738.1.S1_at--885--5731Chr02:14549400..14549424 (25 bp)
GACTGGGTGCTTCATTGGATGCTTT
LOC_Os02g25070
OsAffx.2738.1.S1_at--990--1111Chr02:14549425..14549449 (25 bp)
AGTGACTGACAGTGGCCCGATCAAA
LOC_Os02g25070
OsAffx.2738.1.S1_at--165--6451Chr02:14549471..14549495 (25 bp)
GATCAGCTGCCCGATGATATAATTG
LOC_Os02g25070
Target Sequence 
ACAAGCATTGTTAGACCTCGCGCTCCTACTCATGTATTGGCAAGTTCTTTTTATTTCTATCCTTTCATTTCAGCTGATAT
TATCAATTCTGACATCCAACATTTTCAGCCCAAGGCTCCATCGTCTTCTCCTCGTCGACGAGCACCAAGTGAACGTACTA
CTTCCGCGATCGGCAGCCAACAGGGAGAAGAAGAAATAACTGCTGCTGTTGTACCCCCAATCCAAGTAAGCATACCCATA
TCACAAATTCCTGGCCATCTTTGCTTTTTCTCATCTTTCACCCATACTTCGCAGAAGCTAGCCGATATGTTTTCATCTTA
CATAAGGCAATTTTTGGACGAAGATGATGAAGACATCACAAGCAAGACCAAATTTTCTATCTCTGATGACTTGAGAGCAC
GACTGTTAGACATAGCTGATCGACTGGGTGCTTCATTGGATGCTTTAGTGACTGACAGTGGCCCGATCAAAGGGAGACTT
GAAGAAGTCCAAGATCAGCTGCCCGATGATATAATTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2738.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis