Browse Element(s) Details


Os.17815.1.S1_at

Description gb:AK108038.1
DB_XREF= gi:32993247
TID=Os.17815.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.17815 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-137-C11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-137-C11, full insert sequence.
FL= gb:AK108038.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2508011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g25060Os.7259.1.S1_at10/112+14523793..14531633C2 domain-containing protein, putative, expressed
LOC_Os02g25070OsAffx.2738.1.S1_at11/112+14548326..14549539hypothetical protein
LOC_Os02g25080Os.17815.1.S1_at11/112+14551226..14553252expressed protein
LOC_Os02g25090OsAffx.22699.1.S1_x_at3/112+14561324..14565023retrotransposon protein, putative, unclassified
LOC_Os02g25090OsAffx.18275.1.S1_x_at1/112+14561324..14565023retrotransposon protein, putative, unclassified
LOC_Os02g25100NANA2+14565482..14567715retrotransposon protein, putative, unclassified
LOC_Os02g25110NANA2+14568248..14570920hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17815.1.S1_at--868--7071Chr02:14552916..14552940 (25 bp)
GTAATTGTACATGACCTGACCCTGT
LOC_Os02g25080
Os.17815.1.S1_at--262--1771Chr02:14552929..14552953 (25 bp)
ACCTGACCCTGTGGATGGTTTGGTA
LOC_Os02g25080
Os.17815.1.S1_at--953--7971Chr02:14552955..14552979 (25 bp)
GGATCCATCCAAGTAGCAGCTTAAG
LOC_Os02g25080
Os.17815.1.S1_at--390--3671Chr02:14553001..14553025 (25 bp)
CTTAGCATCAGTAAACCGGTGTGGT
LOC_Os02g25080
Os.17815.1.S1_at--1100--6971Chr02:14553024..14553048 (25 bp)
GTACCATTATACTTAGGCCTAGCCC
LOC_Os02g25080
Os.17815.1.S1_at--628--2271Chr02:14553050..14553074 (25 bp)
AAATCTCTCACTGCTGCAAGCATCT
LOC_Os02g25080
Os.17815.1.S1_at--958--1251Chr02:14553124..14553148 (25 bp)
AGAGGTTTCAAGCACCTTCCTACTA
LOC_Os02g25080
Os.17815.1.S1_at--356--3631Chr02:14553139..14553163 (25 bp)
CTTCCTACTAAGATGTCAGCTCCTT
LOC_Os02g25080
Os.17815.1.S1_at--578--1591Chr02:14553156..14553180 (25 bp)
AGCTCCTTTTATCCGTAGCTGACTG
LOC_Os02g25080
Os.17815.1.S1_at--1095--4231Chr02:14553168..14553192 (25 bp)
CCGTAGCTGACTGTGTTGTGGATTA
LOC_Os02g25080
Os.17815.1.S1_at--851--2931Chr02:14553228..14553252 (25 bp)
AAGGCTTTGCATCAGTTTTCGTTTT
LOC_Os02g25080
Target Sequence 
GTAATTGTACATGACCTGACCCTGTGGATGGTTTGGTAAGGATCCATCCAAGTAGCAGCTTAAGAGTATAGGGTAGAGTA
TAAATCTTAGCATCAGTAAACCGGTGTGGTACCATTATACTTAGGCCTAGCCCNNAAATCTCTCACTGCTGCAAGCATCT
TTCTTCAGATTATTAACCTTGNAGANGATGATNGGTGAANCACAGTACTAGAGGTTTCAAGCACCTTCCTACTAAGATGT
CAGCTCCTTTTATCCGTAGCTGACTGTGTTGTGGATTACAAGAAGTGCNATAGGAAAACNAAATGGGTTACCAAAGGCTT
TGCATCAGTTTTCGTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17815.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis