Browse Element(s) Details


OsAffx.29110.1.S1_at

Description tigr:9636.m00844
TID=OsAffx.29110.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g089108/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g08870OsAffx.19542.3.S1_x_at2/118+5146553..5150459retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g08880OsAffx.16903.1.S1_at11/118+5160866..5163221hypothetical protein
LOC_Os08g08890OsAffx.16904.1.S1_at10/118+5165347..5167682hypothetical protein
LOC_Os08g08900OsAffx.16905.1.S1_at6/118+5171144..5171931hypothetical protein
LOC_Os08g08910OsAffx.29110.1.S1_at8/118+5173503..5175177hypothetical protein
LOC_Os08g08920NANA8+5180531..5181354Germin-like protein subfamily 1 member 11 precursor, putative
LOC_Os08g08930OsAffx.16906.1.S1_at11/118+5187545..5187961hypothetical protein
LOC_Os08g08940NANA8+5189767..5193072transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g08950Os.47463.1.S1_x_at4/118+5194673..5199735transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g08950Os.14491.2.S1_x_at3/118+5194673..5199735transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29110.1.S1_at--869--4371Chr08:5175116..5175140 (25 bp)
CCAAAGGATGGCAAGCTGTCGGAAT
LOC_Os08g08910
OsAffx.29110.1.S1_at--582--3291Chr08:5175115..5175139 (25 bp)
CAAAGGATGGCAAGCTGTCGGAATC
LOC_Os08g08910
OsAffx.29110.1.S1_at--562--995Chr09:4509418..4509437 (20 bp)
AGGATGGCAAGCTGTCGGAATCCAT
NONE
OsAffx.29110.1.S1_at--391--855Chr09:4509418..4509440 (23 bp)
ATGGCAAGCTGTCGGAATCCATCTA
NONE
OsAffx.29110.1.S1_at--543--8236Chr09:4509418..4509441 (24 bp)
GGCAAGCTGTCGGAATCCATCTAGA
NONE
OsAffx.29110.1.S1_at--981--5153Chr09:4509419..4509441 (23 bp)
GCAAGCTGTCGGAATCCATCTAGAT
NONE
OsAffx.29110.1.S1_at--205--2696Chr09:4509421..4509441 (21 bp)
AAGCTGTCGGAATCCATCTAGATTT
NONE
OsAffx.29110.1.S1_at--781--4734Chr09:4509423..4509686 (25 bp)
GCTGTCGGAATCCATCTAGATTTGG
NONE
OsAffx.29110.1.S1_at--864--7171NONE
GTCGGAATCCATCTAGATTTGGGTC
NONE
OsAffx.29110.1.S1_at--77--8211NONE
GGAATCCATCTAGATTTGGGTCAAG
NONE
OsAffx.29110.1.S1_at--823--9917Chr09:4523963..4523987 (25 bp)
TACGATGACCCCGATAATTTAGAAA
NONE
Target Sequence 
CCAAAGGATGGCAAGCTGTCGGAATCCATCTAGATTTGGGTCAAGAGGAGGACCCTTATGACTATTACTACGATGACCCC
GATAATTTAGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29110.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis