Browse Element(s) Details


OsAffx.29317.1.S1_at

Description tigr:9636.m02295
TID=OsAffx.29317.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2352011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g23480OsAffx.9975.1.S1_at5/118+14081554..14087491retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g23480OsAffx.19542.3.S1_x_at2/118+14081554..14087491retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g23490NANA8+14089982..14092042retrotransposon protein, putative, unclassified
LOC_Os08g23500NANA8+14092677..14093117transposon protein, putative, unclassified
LOC_Os08g23510NANA8+14100569..14104965retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g23520OsAffx.29317.1.S1_at11/118+14105533..14106306hypothetical protein
LOC_Os08g23530NANA8+14113820..14114563retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g23540Os.48015.1.A1_x_at1/118+14117945..14120185retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g23550OsAffx.29318.1.S1_at11/118+14122871..14123188hypothetical protein
LOC_Os08g23560OsAffx.5904.1.S1_at11/118+14125457..14126229hypothetical protein
LOC_Os08g23570OsAffx.5905.1.S1_at10/118+14127657..14130663B3 DNA binding domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29317.1.S1_at--115--671Chr08:14106096..14106120 (25 bp)
ATGAATGATGCTGCCTACAGCGCTA
LOC_Os08g23520
OsAffx.29317.1.S1_at--432--5331Chr08:14106046..14106070 (25 bp)
GAAGTGCGCTGTGGATTACCGCTTT
LOC_Os08g23520
OsAffx.29317.1.S1_at--71--3731Chr08:14105986..14106010 (25 bp)
CTACCCTGGTCTGGAATCTGCTCAA
LOC_Os08g23520
OsAffx.29317.1.S1_at--701--8291Chr08:14105931..14105955 (25 bp)
GGCTACTTCGTTAGGTCCCAGGAGA
LOC_Os08g23520
OsAffx.29317.1.S1_at--217--7971Chr08:14105896..14105920 (25 bp)
GGATCTGATGCATGAGCTCCATCGA
LOC_Os08g23520
OsAffx.29317.1.S1_at--475--4971Chr08:14105861..14105885 (25 bp)
GCATCGCTATTCTCGACCGTGAGGT
LOC_Os08g23520
OsAffx.29317.1.S1_at--72--9871Chr08:14105725..14105749 (25 bp)
TACACCATCTCCTACTGTCAAAGGG
LOC_Os08g23520
OsAffx.29317.1.S1_at--1087--1151Chr08:14105691..14105715 (25 bp)
AGTCACCGGGTTGTTGCTGATATTC
LOC_Os08g23520
OsAffx.29317.1.S1_at--644--231Chr08:14105623..14105647 (25 bp)
ATATTACCGCGGGAGCTGTTACCGT
LOC_Os08g23520
OsAffx.29317.1.S1_at--567--9951Chr08:14105604..14105628 (25 bp)
TACCGTTTGGTGATGCAGGCACCTC
LOC_Os08g23520
OsAffx.29317.1.S1_at--915--611Chr08:14105564..14105588 (25 bp)
ATGCGGAGATGACTTCTAGCTCTTC
LOC_Os08g23520
Target Sequence 
ATGAATGATGCTGCCTACAGCGCTACCGGCTTTCTCCGTGACACGAGCCCGAAGTGCGCTGTGGATTACCGCTTTGTTCC
CTCTAGGCCGGGTGCTAGTCGCTTTGCCACCTACCCTGGTCTGGAATCTGCTCAAGGGGAACCGCCCTCCCCTCACCTCC
GTTTGGGCTACTTCGTTAGGTCCCAGGAGAGGATCATCGAGGATCTGATGCATGAGCTCCATCGAGCGAGGCGGCGCATC
GCTATTCTCGACCGTGAGGTGGAACCCCGAGCTGGGATTTGGGCCATCCCACCCGAGGTCGTGTACGGCGAAGACGCCAT
GCTACCAGCGGAGGAGGAGCTGCCCCCTCCATCAGGTTACTACAAGCTGATTACACCATCTCCTACTGTCAAAGGGCATG
GTGGTAGTCACCGGGTTGTTGCTGATATTCCACCCCCTTCTGGCCTCCTTGTTGAGGGGCCAAACCACATCCGATATTAC
CGCGGGAGCTGTTACCGTTTGGTGATGCAGGCACCTCCGCCTCTTGATGATGATGCGGAGATGACTTCTAGCTCTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29317.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis