Browse Element(s) Details


OsAffx.29336.1.S1_at

Description tigr:9636.m02437
TID=OsAffx.29336.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2488011/11hydroxyproline-rich glycoprotein family protein, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g24860NANA8+14911384..14914692transposon protein, putative, unclassified
LOC_Os08g24870NANA8+14915336..14921491transposon protein, putative, unclassified
LOC_Os08g24880OsAffx.29336.1.S1_at11/118+14926267..14931795hydroxyproline-rich glycoprotein family protein, putative
LOC_Os08g24890OsAffx.5915.1.S1_at11/118+14933949..14936121hypothetical protein
LOC_Os08g24900OsAffx.17137.1.S1_at10/118+14938060..14939635hypothetical protein
LOC_Os08g24900OsAffx.10482.1.S1_x_at1/118+14938060..14939635hypothetical protein
LOC_Os08g24900OsAffx.12972.1.S1_at1/118+14938060..14939635hypothetical protein
LOC_Os08g24910OsAffx.29337.1.S1_at11/118+14947652..14948200hypothetical protein
LOC_Os08g24920OsAffx.17138.1.S1_at11/118+14955723..14957080hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29336.1.S1_at--188--9691Chr08:14931153..14931177 (25 bp)
TCACAGCACGTGTTTGGGAGGTTCC
LOC_Os08g24880
OsAffx.29336.1.S1_at--576--2251Chr08:14931192..14931302 (25 bp)
AAATATTCATCTACTGCCTGGACCA
LOC_Os08g24880
OsAffx.29336.1.S1_at--1007--8091Chr08:14931297..14931321 (25 bp)
GGACCATGACATTGATGCTACTTTT
LOC_Os08g24880
OsAffx.29336.1.S1_at--660--6431Chr08:14931337..14931361 (25 bp)
GATCATATAAAGTTCCCTTCAGCCC
LOC_Os08g24880
OsAffx.29336.1.S1_at--1037--3651Chr08:14931353..14931377 (25 bp)
CTTCAGCCCCACAAATTGAGAGAGT
LOC_Os08g24880
OsAffx.29336.1.S1_at--211--711Chr08:14931428..14931452 (25 bp)
ATGAGGTTTCACCAGAATCTGCTGA
LOC_Os08g24880
OsAffx.29336.1.S1_at--563--3051Chr08:14931443..14931467 (25 bp)
AATCTGCTGAGCTGTCAACAAAACC
LOC_Os08g24880
OsAffx.29336.1.S1_at--250--371Chr08:14931566..14931590 (25 bp)
ATAATCTTCTAGAGCACGAGTGTGC
LOC_Os08g24880
OsAffx.29336.1.S1_at--821--9671Chr08:14931625..14931649 (25 bp)
TCACCTATTGTTAGGGCTGCTGCTT
LOC_Os08g24880
OsAffx.29336.1.S1_at--427--2571Chr08:14931692..14931716 (25 bp)
AACTGGGCTCTTCTATTCTTATGGA
LOC_Os08g24880
OsAffx.29336.1.S1_at--691--4811Chr08:14931731..14931755 (25 bp)
GCTCTCCTTGCCCTGTGAATAGTGG
LOC_Os08g24880
Target Sequence 
TCACAGCACGTGTTTGGGAGGTTCCCAAAGGAGATCCTAAAATATTCATCTACTGCCTGGACCATGACATTGATGCTACT
TTTAGAACACCTTGTAGGGATCATATAAAGTTCCCTTCAGCCCCACAAATTGAGAGAGTAAAAGATCTTGCTAGGAAAAA
GGTTAAAGTTACTGATATAAGGAACACCGATGAGGTTTCACCAGAATCTGCTGAGCTGTCAACAAAACCAAGTAGGGAAG
AAGGTGATCAAAGTCAAGAAGTACCTATAAGTAGGGAAGAAGGTGATCAAAGTCAAGAAGTACCTTTTAGTAATAAGCAA
ATGGATCATAATCTTCTAGAGCACGAGTGTGCAACAAATAACTTGAGAGTGGATCTGCAATATGAATCACCTATTGTTAG
GGCTGCTGCTTCTGTTTTAATCAGTTCAGAAGCTGCGAAATTGCAAGAAAATCAACTGGGCTCTTCTATTCTTATGGAAA
AAACATCAAAGAGCTCTCCTTGCCCTGTGAATAGTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29336.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis