Browse Element(s) Details


OsAffx.29379.1.S1_at

Description tigr:9636.m02694
TID=OsAffx.29379.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2726011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g27220OsAffx.5949.1.S1_at11/118+16487328..16488266AP2 domain containing protein
LOC_Os08g27230NANA8+16488851..16489342hypothetical protein
LOC_Os08g27240Os.47452.1.A1_at7/118+16494729..16500531expressed protein
LOC_Os08g27250Os.54554.1.S1_at11/118+16506958..16509404expressed protein
LOC_Os08g27260OsAffx.29379.1.S1_at11/118+16512898..16513149hypothetical protein
LOC_Os08g27270OsAffx.21897.5.S1_x_at6/118+16518364..16521304retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g27280NANA8+16521622..16527714retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g27290OsAffx.17186.1.S1_at10/118+16529002..16531708hAT family dimerisation domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29379.1.S1_at--34--7191Chr08:16513095..16513119 (25 bp)
GTCTGTCTGGTGGTTTTGTCCGTGG
LOC_Os08g27260
OsAffx.29379.1.S1_at--304--8411Chr08:16513026..16513050 (25 bp)
GGCGCCACGACGTGCAACTGCGACA
LOC_Os08g27260
OsAffx.29379.1.S1_at--1105--1891Chr08:16513017..16513041 (25 bp)
ACGTGCAACTGCGACACAAGCGGTT
LOC_Os08g27260
OsAffx.29379.1.S1_at--88--1991Chr08:16513010..16513034 (25 bp)
ACTGCGACACAAGCGGTTGCTACAA
LOC_Os08g27260
OsAffx.29379.1.S1_at--902--2671Chr08:16513000..16513024 (25 bp)
AAGCGGTTGCTACAATTGCATGCTG
LOC_Os08g27260
OsAffx.29379.1.S1_at--218--3171Chr08:16512988..16513012 (25 bp)
CAATTGCATGCTGGATGTCGTCACC
LOC_Os08g27260
OsAffx.29379.1.S1_at--1125--611Chr08:16512981..16513005 (25 bp)
ATGCTGGATGTCGTCACCAACTGGT
LOC_Os08g27260
OsAffx.29379.1.S1_at--765--7991Chr08:16512976..16513000 (25 bp)
GGATGTCGTCACCAACTGGTGCAAA
LOC_Os08g27260
OsAffx.29379.1.S1_at--401--8611Chr08:16512960..16512984 (25 bp)
TGGTGCAAAGGCAGAGATTTCAACT
LOC_Os08g27260
OsAffx.29379.1.S1_at--366--191Chr08:16512944..16512968 (25 bp)
ATTTCAACTGGATGGTGTTCACCGC
LOC_Os08g27260
OsAffx.29379.1.S1_at--156--8011Chr08:16512935..16512959 (25 bp)
GGATGGTGTTCACCGCCTGCTTGAT
LOC_Os08g27260
Target Sequence 
GTCTGTCTGGTGGTTTTGTCCGTGGGGCAGTCCATGATGATGACGGCGGCGGCAACTACTGCCGCCACCGGCGCCACGAC
GTGCAACTGCGACACAAGCGGTTGCTACAATTGCATGCTGGATGTCGTCACCAACTGGTGCAAAGGCAGAGATTTCAACT
GGATGGTGTTCACCGCCTGCTTGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29379.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis