Browse Element(s) Details


OsAffx.29443.1.S1_at

Description tigr:9636.m03094
TID=OsAffx.29443.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3098011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g30940NANA8+18971302..18974187retrotransposon protein, putative, unclassified
LOC_Os08g30950OsAffx.22699.1.S1_x_at1/118+18974608..18977408retrotransposon protein, putative, unclassified
LOC_Os08g30950OsAffx.8201.1.S1_x_at1/118+18974608..18977408retrotransposon protein, putative, unclassified
LOC_Os08g30960NANA8+18980891..18982617hypothetical protein
LOC_Os08g30970OsAffx.17255.1.S1_at11/118+18986248..18987104hypothetical protein
LOC_Os08g30980OsAffx.29443.1.S1_at11/118+18991590..18994885hypothetical protein
LOC_Os08g30990NANA8+18997228..19004789retrotransposon protein, putative, unclassified
LOC_Os08g31000Os.17407.1.S1_at11/118+19006833..19009834expressed protein
LOC_Os08g31010NANA8+19012410..19017302retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29443.1.S1_at--90--7891Chr08:18993765..18993789 (25 bp)
GGTTATTGATCTACCAATGGTTCAC
LOC_Os08g30980
OsAffx.29443.1.S1_at--1055--9251Chr08:18993819..18993843 (25 bp)
TCCTGCCTGTGATGTGTGCCAAGAT
LOC_Os08g30980
OsAffx.29443.1.S1_at--880--2251Chr08:18993868..18993892 (25 bp)
AAATACTGGACTGCCGACATAATTG
LOC_Os08g30980
OsAffx.29443.1.S1_at--879--9731Chr08:18993887..18993911 (25 bp)
TAATTGGACAATCCGTTGCTTCCCT
LOC_Os08g30980
OsAffx.29443.1.S1_at--23--10731Chr08:18993902..18993926 (25 bp)
TTGCTTCCCTTAATGTAACTTCTGG
LOC_Os08g30980
OsAffx.29443.1.S1_at--286--5411Chr08:18993929..18993953 (25 bp)
GAAGCTGGACCTATAACTTATGGAT
LOC_Os08g30980
OsAffx.29443.1.S1_at--614--8531Chr08:18993988..18994012 (25 bp)
TGGACTCCCAAGTACTGTGAGCACT
LOC_Os08g30980
OsAffx.29443.1.S1_at--273--8691Chr08:18994003..18994027 (25 bp)
TGTGAGCACTACATGCCCGTTAGAT
LOC_Os08g30980
OsAffx.29443.1.S1_at--567--31Chr08:18994787..18994811 (25 bp)
ATTGTTATGGTCCTGTTGGTGTACA
LOC_Os08g30980
OsAffx.29443.1.S1_at--566--7011Chr08:18994807..18994831 (25 bp)
GTACAGGTTCAGAGTTTTTGTTCCT
LOC_Os08g30980
OsAffx.29443.1.S1_at--60--10671Chr08:18994827..18994851 (25 bp)
TTCCTGAGAATCATCTTCCATTGTA
LOC_Os08g30980
Target Sequence 
GGTTATTGATCTACCAATGGTTCACATGTATGGTGTTGGCTTGGGGGTCCAGTCTCCTGCCTGTGATGTGTGCCAAGATA
GACTACTGCAGAATACAGCTTATAAATACTGGACTGCCGACATAATTGGACAATCCGTTGCTTCCCTTAATGTAACTTCT
GGAAGAAGCTGGACCTATAACTTATGGATGGCAAGAAGTGGCAGTGCTCGGAGGAGGCTGCCCTGGACTCCCAAGTACTG
TGAGCACTACATGCCCGTTAGATCTGGGATAATTTCAATTGTTATGGTCCTGTTGGTGTACAGGTTCAGAGTTTTTGTTC
CTGAGAATCATCTTCCATTGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29443.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis