Browse Element(s) Details


OsAffx.29534.1.S1_at

Description tigr:9636.m03558
TID=OsAffx.29534.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3541010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g35360NANA8+22163374..22163978hypothetical protein
LOC_Os08g35370OsAffx.3348.1.S1_at1/118+22164209..22167473transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g35380NANA8+22172963..22175562retrotransposon protein, putative, unclassified
LOC_Os08g35390NANA8+22176338..22182145retrotransposon protein, putative, unclassified
LOC_Os08g35400NANA8+22183460..22184119hypothetical protein
LOC_Os08g35410OsAffx.29534.1.S1_at10/118+22186936..22189115hypothetical protein
LOC_Os08g35420Os.46404.1.S1_x_at11/118+22191746..22192833Photosystem Q, putative, expressed
LOC_Os08g35430NANA8+22200566..22200967hypothetical protein
LOC_Os08g35440Os.6359.1.S1_at11/118+22201764..22203281Serine/threonine protein phosphatase PP1 isozyme 2, putative, expressed
LOC_Os08g35450NANA8+22212794..22217486retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29534.1.S1_at--653--1551Chr08:22187042..22187066 (25 bp)
AGCTTGCCTGCGTGACCTCAAACTT
LOC_Os08g35410
OsAffx.29534.1.S1_at--1151--7231NONE
GTCGCCGTCGCTGATTACATTCAAA
NONE
OsAffx.29534.1.S1_at--359--2311Chr08:22187863..22187887 (25 bp)
AAAGTGCTAAACGTGCATACGTAAC
LOC_Os08g35410
OsAffx.29534.1.S1_at--82--4951Chr08:22187877..22187901 (25 bp)
GCATACGTAACTATCTTTGCCGAGA
LOC_Os08g35410
OsAffx.29534.1.S1_at--535--10691Chr08:22187893..22187917 (25 bp)
TTGCCGAGATATACGGTTCTTTTTT
LOC_Os08g35410
OsAffx.29534.1.S1_at--118--5572Chr08:22188889..22188913 (25 bp)
GAAAGGGATCCTCGATATGAACGAA
LOC_Os08g35410
OsAffx.29534.1.S1_at--614--5511Chr08:22188922..22188946 (25 bp)
GAAAATACGAACACCATGCCGACAT
LOC_Os08g35410
OsAffx.29534.1.S1_at--1107--591Chr08:22188937..22188961 (25 bp)
ATGCCGACATCAATCACCTGGTGCT
LOC_Os08g35410
OsAffx.29534.1.S1_at--432--7312Chr08:22188957..22188981 (25 bp)
GTGCTGGTGTACATCGTGCCGTCAC
LOC_Os08g35410
OsAffx.29534.1.S1_at--1007--9671Chr08:22188978..22189002 (25 bp)
TCACGCTGTTCTCCATGGCGTTCTG
LOC_Os08g35410
OsAffx.29534.1.S1_at--957--9091Chr08:22189059..22189082 (24 bp)
TGCTCGCATCGGCATGACTGCAAAA
LOC_Os08g35410
Target Sequence 
AGCTTGCCTGCGTGACCTCAAACTTCCTCCCAACCTCCAATTCCGCAAGAGGGGCGGTGTTGGCAGTCGCCGTCGCTGAT
TACATTCAAAATTTTAAAAGTGCTAAACGTGCATACGTAACTATCTTTGCCGAGATATACGGTTCTTTTTTTTTGCCAAA
AAATGAAAGGGATCCTCGATATGAACGAAAATGCAAGGAAAATACGAACACCATGCCGACATCAATCACCTGGTGCTGGT
GTACATCGTGCCGTCACGCTGTTCTCCATGGCGTTCTGCCGTCGGCCTGCAGCCCTGCACTGCTAGCTCTCCATGCTCGC
ATCGGCATGACTGCAAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29534.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis