Browse Element(s) Details


OsAffx.29627.1.S1_at

Description tigr:9638.m02969
TID=OsAffx.29627.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3385011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g33830OsAffx.22433.2.S1_at10/1110+17615891..17627535MATH domain containing protein
LOC_Os10g33840Os.8626.1.S1_a_at11/1110+17631084..17635089expressed protein
LOC_Os10g33840Os.8626.3.S1_s_at11/1110+17631084..17635089expressed protein
LOC_Os10g33840Os.8626.1.S1_x_at11/1110+17631084..17635089expressed protein
LOC_Os10g33840Os.8626.3.S1_x_at10/1110+17631084..17635089expressed protein
LOC_Os10g33850OsAffx.29627.1.S1_at11/1110+17636496..17638453hypothetical protein
LOC_Os10g33862NANA10+17644205..17645488expressed protein
LOC_Os10g33874Os.46665.1.S1_at11/1110+17650903..17656065expressed protein
LOC_Os10g33874Os.46664.1.A1_at9/1110+17650903..17656065expressed protein
LOC_Os10g33886Os.46664.1.A1_at2/1110+17656069..17656478hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006904biological_processvesicle docking during exocytosis
GO:0000145cellular_componentexocyst
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29627.1.S1_at--107--4411Chr10:17636872..17636896 (25 bp)
GCCACACGATGACGATCGACCAGTT
LOC_Os10g33850
OsAffx.29627.1.S1_at--925--8371Chr10:17636818..17636842 (25 bp)
GGCGACCAGTCCATGGAGGCAAGAT
LOC_Os10g33850
OsAffx.29627.1.S1_at--796--3491Chr10:17636807..17636831 (25 bp)
CATGGAGGCAAGATCCACCCCATGA
LOC_Os10g33850
OsAffx.29627.1.S1_at--108--2031Chr10:17636767..17636791 (25 bp)
ACTACTGTGGTCTCCTCGCTGAGTG
LOC_Os10g33850
OsAffx.29627.1.S1_at--223--7111Chr10:17636664..17636688 (25 bp)
GTCAGGGCGGTGCATGCGGGAGCTC
LOC_Os10g33850
OsAffx.29627.1.S1_at--665--1751Chr10:17636632..17636656 (25 bp)
ACCTCCTCCGCAAGCCGGATGAGAA
LOC_Os10g33850
OsAffx.29627.1.S1_at--416--4491Chr10:17636619..17636643 (25 bp)
GCCGGATGAGAAATCCAGGCTCTAC
LOC_Os10g33850
OsAffx.29627.1.S1_at--545--1411Chr10:17636611..17636635 (25 bp)
AGAAATCCAGGCTCTACGACCACAC
LOC_Os10g33850
OsAffx.29627.1.S1_at--537--1711Chr10:17636593..17636617 (25 bp)
ACCACACCGGGCTGCAGAACATCTT
LOC_Os10g33850
OsAffx.29627.1.S1_at--735--3631Chr10:17636571..17636595 (25 bp)
CTTCCTCATGAATAACCTCTACTGC
LOC_Os10g33850
OsAffx.29627.1.S1_at--96--5231Chr10:17636562..17636586 (25 bp)
GAATAACCTCTACTGCATCGTGCAG
LOC_Os10g33850
Target Sequence 
GCCACACGATGACGATCGACCAGTTCGTCAACGTCATCCACGGCGAGTCGTCGCGGCGACCAGTCCATGGAGGCAAGATC
CACCCCATGACACGCTACGTGCTCAACTACTGTGGTCTCCTCGCTGAGTGCCGCACCACGCTCGACATGGTCCTCGCCGA
CAACAACAACACCAACGATGACCACCACGACGGTGGCGGCGCCTCATCGTCAGGGCGGTGCATGCGGGAGCTCCTCACTC
ACCTCCTCCGCAAGCCGGATGAGAAATCCAGGCTCTACGACCACACCGGGCTGCAGAACATCTTCCTCATGAATAACCTC
TACTGCATCGTGCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29627.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis