Browse Element(s) Details


OsAffx.29782.1.S1_at

Description tigr:9637.m00723
TID=OsAffx.29782.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g0967011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g09630OsAffx.17620.1.S1_at11/119+5186993..5189200WRKY DNA binding domain containing protein
LOC_Os09g09640NANA9+5190398..5190983transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g09650Os.36393.1.S1_at11/119+5196975..5200335expressed protein
LOC_Os09g09650Os.46050.1.A1_x_at2/119+5196975..5200335expressed protein
LOC_Os09g09660NANA9+5201340..5204432retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g09670OsAffx.29782.1.S1_at11/119+5213964..5214838hypothetical protein
LOC_Os09g09670OsAffx.31133.2.S1_at1/119+5213964..5214838hypothetical protein
LOC_Os09g09680NANA9+5222688..5228798retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g09690NANA9+5229026..5235332retrotransposon protein, putative, Ty3-gypsy subclass, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29782.1.S1_at--216--6471Chr09:5214012..5214036 (25 bp)
GATAAGAGAGTCATCCTAGCCGCTT
LOC_Os09g09670
OsAffx.29782.1.S1_at--785--9771Chr09:5214014..5214038 (25 bp)
TAAGAGAGTCATCCTAGCCGCTTAT
LOC_Os09g09670
OsAffx.29782.1.S1_at--764--1351Chr09:5214016..5214040 (25 bp)
AGAGAGTCATCCTAGCCGCTTATAA
LOC_Os09g09670
OsAffx.29782.1.S1_at--663--1331Chr09:5214018..5214042 (25 bp)
AGAGTCATCCTAGCCGCTTATAATT
LOC_Os09g09670
OsAffx.29782.1.S1_at--684--4871Chr09:5214033..5214328 (25 bp)
GCTTATAATTTTAATACGTACAACT
LOC_Os09g09670
OsAffx.29782.1.S1_at--1073--7931Chr09:5214513..5214537 (25 bp)
GGATATTACGAGTGCGAATTCCGCA
LOC_Os09g09670
OsAffx.29782.1.S1_at--869--2191Chr09:5214695..5214719 (25 bp)
ACAAATATCCAGTGCGATCTATGCC
LOC_Os09g09670
OsAffx.29782.1.S1_at--385--691Chr09:5214732..5214756 (25 bp)
ATGAGTGTTGTAATGTGGAAGGAAA
LOC_Os09g09670
OsAffx.29782.1.S1_at--935--6131Chr09:5214770..5214794 (25 bp)
GAGGGTGCCCTCATAGCTATAAGTG
LOC_Os09g09670
OsAffx.29782.1.S1_at--511--7711Chr09:5214772..5214796 (25 bp)
GGGTGCCCTCATAGCTATAAGTGAC
LOC_Os09g09670
OsAffx.29782.1.S1_at--1116--9571Chr09:5214780..5214804 (25 bp)
TCATAGCTATAAGTGACGAATTCAA
LOC_Os09g09670
Target Sequence 
GATAAGAGAGTCATCCTAGCCGCTTATAATTTTAATACGTACAACTACTACAAGTTCAAGGGTGGAGAACAGATTCGAAC
AAGGGAGAAGCTGCTAGTGCATACATATTGGCCGTGTCTCAAGAAACCTAGAGGCACTGTCCTCTGCGGATATTACGAGT
GCGAATTCCGCAGGGTTAATGGGAGGTATAGGGTTAACACAGAGGATTTGCCAAGAATAGAACATCGAACAAGCTTTGAC
GATGCAGGCATCACAAATATCCAGTGCGATCTATGCCACTTCATCCACCATGAGTGTTGTAATGTGGAAGGAAAGTTCTT
CGACCCAGAGGGTGCCCTCATAGCTATAAGTGACGAATTCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29782.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis