Browse Element(s) Details


OsAffx.29822.1.S1_at

Description tigr:9637.m01004
TID=OsAffx.29822.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1278010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g12750Os.6430.1.S1_at11/119+7315075..7321298myb family transcription factor, putative, expressed
LOC_Os09g12750OsAffx.7666.1.S1_at1/119+7315075..7321298myb family transcription factor, putative, expressed
LOC_Os09g12759NANA9+7327463..7327689NA
LOC_Os09g12770Os.14719.1.S1_at11/119+7328560..7332289transfactor, putative, expressed
LOC_Os09g12780OsAffx.29822.1.S1_at10/119+7333179..7333967expressed protein
LOC_Os09g12790OsAffx.17671.1.S1_at11/119+7335374..7339496calcium-activated outward-rectifying potassium channel 6, putative, expressed
LOC_Os09g12800NANA9+7346193..7353032zinc finger family protein, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29822.1.S1_at--651--9291Chr09:7333434..7333458 (25 bp)
TCACCTTCACCGTGGGGTACCATGA
LOC_Os09g12780
OsAffx.29822.1.S1_at--529--3211Chr09:7333471..7333495 (25 bp)
CAAGGTGGCGCTCAAGAAGCCTCTC
LOC_Os09g12780
OsAffx.29822.1.S1_at--795--4293Chr09:7333490..7333514 (25 bp)
CCTCTCCTCGTGCTGAGGAAGAAGA
LOC_Os09g12780
OsAffx.29822.1.S1_at--993--7371Chr09:7333550..7333574 (25 bp)
GTGATCGGCGTGATCCGGCACAAGA
LOC_Os09g12780
OsAffx.29822.1.S1_at--1162--9271Chr09:7333563..7333587 (25 bp)
TCCGGCACAAGATCCTCTTCAAGGA
LOC_Os09g12780
OsAffx.29822.1.S1_at--416--2911Chr09:7333583..7333607 (25 bp)
AAGGACCGGCCCAAGGCTCTCATCT
LOC_Os09g12780
OsAffx.29822.1.S1_at--1093--2911Chr09:7333595..7333902 (25 bp)
AAGGCTCTCATCTCAAAACCGCAGG
LOC_Os09g12780
OsAffx.29822.1.S1_at--928--4811NONE
GCTCTCATCTCAAAACCGCAGGTGA
NONE
OsAffx.29822.1.S1_at--694--211Chr09:7333604..7333911 (25 bp)
ATCTCAAAACCGCAGGTGAAGGAGA
LOC_Os09g12780
OsAffx.29822.1.S1_at--1125--8051Chr09:7333907..7333931 (25 bp)
GGAGAAGAAGACTCTGCCGCTACCG
LOC_Os09g12780
OsAffx.29822.1.S1_at--649--5371Chr09:7333910..7333934 (25 bp)
GAAGAAGACTCTGCCGCTACCGGCG
LOC_Os09g12780
Target Sequence 
TCACCTTCACCGTGGGGTACCATGAGCTCGCCGGCACCAAGGTGGCGCTCAAGAAGCCTCTCCTCGTGCTGAGGAAGAAG
AAGACGACGGCGGTGGCGGCGGAGACGGAGCTGGAGGTGATCGGCGTGATCCGGCACAAGATCCTCTTCAAGGACCGGCC
CAAGGCTCTCATCTCAAAACCGCAGGTGAAGGAGAAGAAGACTCTGCCGCTACCGGCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29822.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis