Browse Element(s) Details


OsAffx.29827.1.S1_at

Description tigr:9637.m01056
TID=OsAffx.29827.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1325011/11hypothetical protein
LOC_Os11g473901/11laccase, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g13230Os.45173.1.S1_x_at4/119+7620709..7628582retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g13240NANA9+7635500..7636967hypothetical protein
LOC_Os09g13250OsAffx.29827.1.S1_at11/119+7640665..7643945hypothetical protein
LOC_Os09g13260OsAffx.29828.1.S1_at9/119+7650310..7651897hypothetical protein
LOC_Os09g13269NANA9+7654260..7654611NA
LOC_Os09g13280NANA9+7657654..7658334transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g13290NANA9+7661992..7662828hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29827.1.S1_at--160--1331Chr09:7643445..7643469 (25 bp)
AGAGGCATTCGCAACGTCGACAGTT
LOC_Os09g13250
OsAffx.29827.1.S1_at--1049--831Chr09:7643529..7643553 (25 bp)
ATGGAACCCGTGAAGCTTGCGGCGC
LOC_Os09g13250
OsAffx.29827.1.S1_at--227--4391Chr09:7643628..7643652 (25 bp)
GCCAACTTCCTTGCCGAAGTGAGGA
LOC_Os09g13250
OsAffx.29827.1.S1_at--392--6051Chr09:7643651..7643675 (25 bp)
GAGATACTACGCAGACGGCGCCAAT
LOC_Os09g13250
OsAffx.29827.1.S1_at--672--5732Chr09:7643664..7643688 (25 bp)
GACGGCGCCAATAAGTTCGACGACC
LOC_Os09g13250
OsAffx.29827.1.S1_at--958--8911Chr09:7643689..7643713 (25 bp)
TGACGCCGTCGAAACTGTTGTTGGT
LOC_Os09g13250
OsAffx.29827.1.S1_at--191--8611Chr09:7643710..7643734 (25 bp)
TGGTCGATGGGTTCTACATCCTCCA
LOC_Os09g13250
OsAffx.29827.1.S1_at--143--571Chr09:7643727..7643751 (25 bp)
ATCCTCCATTGCTTTGGTATCGGCA
LOC_Os09g13250
OsAffx.29827.1.S1_at--248--9371Chr09:7643806..7643830 (25 bp)
TCGAGCACATCCGTGACGTGTTCTA
LOC_Os09g13250
OsAffx.29827.1.S1_at--17--251Chr09:7643845..7643869 (25 bp)
ATATACCCTTCTTCGTCCTTGTGAA
LOC_Os09g13250
OsAffx.29827.1.S1_at--970--10811Chr09:7643863..7643887 (25 bp)
TTGTGAAGATCCACGACCTGTTCTT
LOC_Os09g13250
Target Sequence 
AGAGGCATTCGCAACGTCGACAGTTCCCAGTACACCCAAGACTCGATCCTCGTCGGCCCCTACCACCGCAATCCCGACCA
GCGGATGGAACCCGTGAAGCTTGCGGCGCTCCACGGCGCCCTCCCCGGCGACGAGCAGGAGCAGCGGTCCACGCTGCACC
GCTACCTGGGTGAGATCGCCGCCGCCAACTTCCTTGCCGAAGTGAGGAGATACTACGCAGACGGCGCCAATAAGTTCGAC
GACCTGACGCCGTCGAAACTGTTGTTGGTCGATGGGTTCTACATCCTCCATTGCTTTGGTATCGGCAGATTCGGGGGAGG
AAGCAGCTCCTCCGGCGGCGAGATGTGCGCGCAGGACAACATCGAGCACATCCGTGACGTGTTCTACCTCCTGGAGAACC
ATATACCCTTCTTCGTCCTTGTGAAGATCCACGACCTGTTCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29827.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis