Browse Element(s) Details


OsAffx.29828.1.S1_at

Description tigr:9637.m01057
TID=OsAffx.29828.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g132609/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g13230Os.45173.1.S1_x_at4/119+7620709..7628582retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g13240NANA9+7635500..7636967hypothetical protein
LOC_Os09g13250OsAffx.29827.1.S1_at11/119+7640665..7643945hypothetical protein
LOC_Os09g13260OsAffx.29828.1.S1_at9/119+7650310..7651897hypothetical protein
LOC_Os09g13269NANA9+7654260..7654611NA
LOC_Os09g13280NANA9+7657654..7658334transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g13290NANA9+7661992..7662828hypothetical protein
LOC_Os09g13300Os.26886.6.S1_s_at10/119+7669703..7672379hypothetical protein
LOC_Os09g13300Os.26886.2.S1_s_at7/119+7669703..7672379hypothetical protein
LOC_Os09g13300OsAffx.16467.1.S1_at3/119+7669703..7672379hypothetical protein
LOC_Os09g13300OsAffx.3425.1.S1_at1/119+7669703..7672379hypothetical protein
LOC_Os09g13310NANA9+7674863..7676077retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29828.1.S1_at--313--4991NONE
GCATGAAGTTGTCCGAAGTGCTACA
NONE
OsAffx.29828.1.S1_at--1102--2851Chr09:7651176..7651200 (25 bp)
AAGTGCTACAGGTGGGCAGTTTACT
LOC_Os09g13260
OsAffx.29828.1.S1_at--1139--5011Chr09:7651161..7651185 (25 bp)
GCAGTTTACTATGCCTTCAGGTATG
LOC_Os09g13260
OsAffx.29828.1.S1_at--591--591Chr09:7651151..7651175 (25 bp)
ATGCCTTCAGGTATGACACGGTCCG
LOC_Os09g13260
OsAffx.29828.1.S1_at--406--8951Chr09:7651138..7651162 (25 bp)
TGACACGGTCCGATCAAAGCCAGAT
LOC_Os09g13260
OsAffx.29828.1.S1_at--564--6431Chr09:7651127..7651151 (25 bp)
GATCAAAGCCAGATGGCCCGGTTGC
LOC_Os09g13260
OsAffx.29828.1.S1_at--1052--6671Chr09:7651107..7651131 (25 bp)
GTTGCCCAATTCTCAACGTCATGGG
LOC_Os09g13260
OsAffx.29828.1.S1_at--459--9831NONE
TAAACATACTCCATCGATTTCAACG
NONE
OsAffx.29828.1.S1_at--778--6511Chr09:7650498..7650522 (25 bp)
GATTTCAACGATCGACCATTTAATA
LOC_Os09g13260
OsAffx.29828.1.S1_at--483--6091Chr09:7650457..7650481 (25 bp)
GAGTACGTCTCATTGCATTTTTTAA
LOC_Os09g13260
OsAffx.29828.1.S1_at--868--8991Chr09:7650444..7650468 (25 bp)
TGCATTTTTTAAGCCAAGTACGTCA
LOC_Os09g13260
Target Sequence 
GCATGAAGTTGTCCGAAGTGCTACAGGTGGGCAGTTTACTATGCCTTCAGGTATGACACGGTCCGATCAAAGCCAGATGG
CCCGGTTGCCCAATTCTCAACGTCATGGGCACAACGAGATGACAGAACGTAAGAAACATATCAATAAACATACTCCATCG
ATTTCAACGATCGACCATTTAATAAGAAATCTAAAAAGAAGAGTACGTCTCATTGCATTTTTTAAGCCAAGTACGTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29828.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis