Browse Element(s) Details


OsAffx.29903.1.S1_at

Description tigr:9637.m01534
TID=OsAffx.29903.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Protein kinase domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1791011/11Protein kinase domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g17880OsAffx.29902.1.S1_at10/119+10935862..10938399leaf senescence-associated receptor-like protein kinase, putative
LOC_Os09g17880Os.57395.1.S1_at1/119+10935862..10938399leaf senescence-associated receptor-like protein kinase, putative
LOC_Os09g17890OsAffx.17764.1.S1_at11/119+10942485..10946943hypothetical protein
LOC_Os09g17900OsAffx.17765.1.S1_at11/119+10949430..10951681hypothetical protein
LOC_Os09g17910OsAffx.29903.1.S1_at11/119+10955082..10964500Protein kinase domain containing protein
LOC_Os09g17920OsAffx.92.1.S1_at2/119+10969671..10973912transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os09g17930Os.7775.1.S1_at11/119+10976574..10980275transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os09g17940OsAffx.6318.1.S1_at11/119+10982365..10982730hypothetical protein
LOC_Os09g17950NANA9+10985206..10985586retrotransposon protein, putative, unclassified
LOC_Os09g17960NANA9+10986601..10988460retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0004672molecular_functionprotein kinase activity
GO:0005515molecular_functionprotein binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29903.1.S1_at--1079--2071Chr09:10963689..10963713 (25 bp)
ACATAAAGGTTGTAGTCTGCCAATA
LOC_Os09g17910
OsAffx.29903.1.S1_at--341--5711Chr09:10963815..10963839 (25 bp)
GACTCATATATCAGTGGCTCCAGCT
LOC_Os09g17910
OsAffx.29903.1.S1_at--707--8291Chr09:10964118..10964142 (25 bp)
GGCTTACCGAGAGTAGTGACGTCTA
LOC_Os09g17910
OsAffx.29903.1.S1_at--925--8791Chr09:10964155..10964179 (25 bp)
TGTTCTGCTAGAGATAGTCACCGGT
LOC_Os09g17910
OsAffx.29903.1.S1_at--447--1271Chr09:10964166..10964190 (25 bp)
AGATAGTCACCGGTGAGTCTCCCAT
LOC_Os09g17910
OsAffx.29903.1.S1_at--689--6091Chr09:10964180..10964204 (25 bp)
GAGTCTCCCATGCTACCGGGATTAG
LOC_Os09g17910
OsAffx.29903.1.S1_at--1101--6531Chr09:10964199..10964223 (25 bp)
GATTAGGACACGTCGTTCAACGGGT
LOC_Os09g17910
OsAffx.29903.1.S1_at--958--8851Chr09:10964263..10964287 (25 bp)
TGATGCACGGCTCATAGGTGCCTAC
LOC_Os09g17910
OsAffx.29903.1.S1_at--1014--1031Chr09:10964278..10964302 (25 bp)
AGGTGCCTACGATGTCAGCTCTATG
LOC_Os09g17910
OsAffx.29903.1.S1_at--578--5671Chr09:10964315..10964339 (25 bp)
GACATAGCATTGTTGTGCACTGCTG
LOC_Os09g17910
OsAffx.29903.1.S1_at--212--6511Chr09:10964339..10964363 (25 bp)
GATATTGGTGCCCATAGGCCAACGA
LOC_Os09g17910
Target Sequence 
ACATAAAGGTTGTAGTCTGCCAATAATTCATCGGGATGTGAAGACCCAAAACATTCTCTTGGGTCAAAATTTACAAGCTA
AAATAGCAGATTTTGGACTTTGCAAGACTTATCTAAGTGATACACAGACTCATATATCAGTGGCTCCAGCTGGGTCAGCA
GGTTACATGGATCCTGAGTACTATCACACTGGCAGGCTTACCGAGAGTAGTGACGTCTATAGCTTTGGTGTTGTTCTGCT
AGAGATAGTCACCGGTGAGTCTCCCATGCTACCGGGATTAGGACACGTCGTTCAACGGGTGAAAAAGAAGATTGATGCTG
GTAATATCAGCTTGGTTGCTGATGCACGGCTCATAGGTGCCTACGATGTCAGCTCTATGTGGAAGGTTGTGGACATAGCA
TTGTTGTGCACTGCTGATATTGGTGCCCATAGGCCAACGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29903.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis