Browse Element(s) Details


OsAffx.29902.1.S1_at

Description tigr:9637.m01531
TID=OsAffx.29902.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1788010/11leaf senescence-associated receptor-like protein kinase, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g17840Os.8657.1.S1_at11/119+10914274..10918390Protein transport protein Sec61 alpha subunit isoform 2, putative, expressed
LOC_Os09g17840Os.47940.1.S1_at2/119+10914274..10918390Protein transport protein Sec61 alpha subunit isoform 2, putative, expressed
LOC_Os09g17840Os.37995.1.S1_at1/119+10914274..10918390Protein transport protein Sec61 alpha subunit isoform 2, putative, expressed
LOC_Os09g17850Os.27991.1.S1_at11/119+10921465..10925975histone acetyl transferase, putative, expressed
LOC_Os09g17860OsAffx.17763.1.S1_at11/119+10926163..10926973expressed protein
LOC_Os09g17870Os.47940.1.S1_at11/119+10927395..10929717Cytidylyltransferase family protein, expressed
LOC_Os09g17870OsAffx.24902.1.S1_s_at1/119+10927395..10929717Cytidylyltransferase family protein, expressed
LOC_Os09g17880OsAffx.29902.1.S1_at10/119+10935862..10938399leaf senescence-associated receptor-like protein kinase, putative
LOC_Os09g17880Os.57395.1.S1_at1/119+10935862..10938399leaf senescence-associated receptor-like protein kinase, putative
LOC_Os09g17890OsAffx.17764.1.S1_at11/119+10942485..10946943hypothetical protein
LOC_Os09g17900OsAffx.17765.1.S1_at11/119+10949430..10951681hypothetical protein
LOC_Os09g17910OsAffx.29903.1.S1_at11/119+10955082..10964500Protein kinase domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29902.1.S1_at--353--3511Chr09:10936556..10936580 (25 bp)
CATGGGCCCATCAAAATCACGTATT
LOC_Os09g17880
OsAffx.29902.1.S1_at--441--10191NONE
TATTTTACGGTACCCTGATGACCCA
NONE
OsAffx.29902.1.S1_at--339--8871Chr09:10937486..10937510 (25 bp)
TGATGACCCATATGACCGACGCTGG
LOC_Os09g17880
OsAffx.29902.1.S1_at--352--10711Chr09:10937511..10937535 (25 bp)
TTGCGGATGCAGCTTGATCGGACAT
LOC_Os09g17880
OsAffx.29902.1.S1_at--870--311Chr09:10937569..10937593 (25 bp)
ATACGAGTTTGGACTACGCTGTGCC
LOC_Os09g17880
OsAffx.29902.1.S1_at--767--2991Chr09:10937631..10937655 (25 bp)
AATGAGACGTCGCTCGCCATTACAG
LOC_Os09g17880
OsAffx.29902.1.S1_at--10--2371Chr09:10937754..10937778 (25 bp)
AAAGCGTCAGTCCAGATGAGGCCAT
LOC_Os09g17880
OsAffx.29902.1.S1_at--747--6471Chr09:10937793..10937817 (25 bp)
GATACCCTCCACAGTACATACAAGG
LOC_Os09g17880
OsAffx.29902.1.S1_at--290--7551Chr09:10937824..10937848 (25 bp)
GTGGCGTGTGCACAATGACTCTTAC
LOC_Os09g17880
OsAffx.29902.1.S1_at--439--10611Chr09:10937869..10937893 (25 bp)
TTCGGCCGATGCTCAACGCGTTTGA
LOC_Os09g17880
OsAffx.29902.1.S1_at--405--5611Chr09:10937916..10937940 (25 bp)
GACAATCCGATGACATTCCCTAGAG
LOC_Os09g17880
Target Sequence 
CATGGGCCCATCAAAATCACGTATTTTACGGTACCCTGATGACCCATATGACCGACGCTGGTTGCGGATGCAGCTTGATC
GGACATGGAAGAACCTTTCCACTGCGTCGACCATCAAGGATACGAGTTTGGACTACGCTGTGCCCTTGCCTGTTATGCAG
ACTGCCGCTGAGGCGGTCAGCAATGAGACGTCGCTCGCCATTACAGGGGAATACAAAGCACCAATGGGTCAGCTTGAAGT
GTTCATGCACTTTGCAGACTTCCAGAACAGCCAGATCCGGCAGTTCAGCATCTCCTTCAACAAGAAAGCGTCAGTCCAGA
TGAGGCCATCGTACCTAGCCACCGATACCCTCCACAGTACATACAAGGCCACCGGTGGCGTGTGCACAATGACTCTTACG
TCTACCTCCGAGTCCACTCTTCGGCCGATGCTCAACGCGTTTGAGGTTTACAGTGTGATCCCCCGTGACAATCCGATGAC
ATTCCCTAGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29902.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis