Browse Element(s) Details


OsAffx.17763.1.S1_at

Description tigr:9637.m01529
TID=OsAffx.17763.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1786011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g17830Os.8657.1.S1_at11/119+10904712..10908704Protein transport protein Sec61 alpha subunit isoform 2, putative, expressed
LOC_Os09g17840Os.8657.1.S1_at11/119+10914274..10918390Protein transport protein Sec61 alpha subunit isoform 2, putative, expressed
LOC_Os09g17840Os.47940.1.S1_at2/119+10914274..10918390Protein transport protein Sec61 alpha subunit isoform 2, putative, expressed
LOC_Os09g17840Os.37995.1.S1_at1/119+10914274..10918390Protein transport protein Sec61 alpha subunit isoform 2, putative, expressed
LOC_Os09g17850Os.27991.1.S1_at11/119+10921465..10925975histone acetyl transferase, putative, expressed
LOC_Os09g17860OsAffx.17763.1.S1_at11/119+10926163..10926973expressed protein
LOC_Os09g17870Os.47940.1.S1_at11/119+10927395..10929717Cytidylyltransferase family protein, expressed
LOC_Os09g17870OsAffx.24902.1.S1_s_at1/119+10927395..10929717Cytidylyltransferase family protein, expressed
LOC_Os09g17880OsAffx.29902.1.S1_at10/119+10935862..10938399leaf senescence-associated receptor-like protein kinase, putative
LOC_Os09g17880Os.57395.1.S1_at1/119+10935862..10938399leaf senescence-associated receptor-like protein kinase, putative
LOC_Os09g17890OsAffx.17764.1.S1_at11/119+10942485..10946943hypothetical protein
LOC_Os09g17900OsAffx.17765.1.S1_at11/119+10949430..10951681hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17763.1.S1_at--56--5051Chr09:10926413..10926437 (25 bp)
GCAGAATGCCAGTTCCTGAACCAAT
LOC_Os09g17860
OsAffx.17763.1.S1_at--379--5432Chr09:10926430..10926454 (25 bp)
GAACCAATCGCACCCATGAAATCAG
LOC_Os09g17860
OsAffx.17763.1.S1_at--456--791Chr09:10926508..10926532 (25 bp)
ATGTGTCTGTTCAATTCCTTCTGCA
LOC_Os09g17860
OsAffx.17763.1.S1_at--777--6851Chr09:10926534..10926558 (25 bp)
GTTTGACTCACAATGGCCAGGCATC
LOC_Os09g17860
OsAffx.17763.1.S1_at--731--3371Chr09:10926558..10926582 (25 bp)
CACCATTTGTTGTCCTGTTAGAGAA
LOC_Os09g17860
OsAffx.17763.1.S1_at--900--3231Chr09:10926591..10926615 (25 bp)
CAAGCGGCTTGGATAATCACTCGGC
LOC_Os09g17860
OsAffx.17763.1.S1_at--48--10011Chr09:10926739..10926763 (25 bp)
TAGCTGCCTTCAGGATTGGTGGCCT
LOC_Os09g17860
OsAffx.17763.1.S1_at--269--7291Chr09:10926795..10926819 (25 bp)
GTGCCGGTTTCAATTCTATGGTCCT
LOC_Os09g17860
OsAffx.17763.1.S1_at--164--10111Chr09:10926811..10926835 (25 bp)
TATGGTCCTCTTGGTCTCTAGGCAA
LOC_Os09g17860
OsAffx.17763.1.S1_at--329--10032Chr12:19236388..19236411 (24 bp)
TAGAGTTTTCGACTCTGCGTTGTCC
NONE
OsAffx.17763.1.S1_at--339--3772Chr09:10926908..10926932 (25 bp)
CTCTCTGAGGGTCATCTATGGTCTT
LOC_Os09g17860
Target Sequence 
GCAGAATGCCAGTTCCTGAACCAATCGCACCCATGAAATCAGCTAGAACAGTCAATGCACCAATGCACACTCCACCAAAT
GCAGCGGCAGTGGAGATGTGTCTGTTCAATTCCTTCTGCAAGTTTGACTCACAATGGCCAGGCATCACCATTTGTTGTCC
TGTTAGAGAACAGGACTACAAGCGGCTTGGATAATCACTCGGCCTGCCCCTTCTGCACCCAAGAGCTTGAGACGGCGAAC
CACATCCTCCTCGATTGCGTGTTCACTCGGCAAGTTTGGCTCCGTGTGCTGTCGCCTCTTGGTTGGACTGCCCTCTCTCC
TCGTGGTAGCTGCCTTCAGGATTGGTGGCCTTCTTCTAGGGCTTGCTTGCCTAGGCATCTCCGTGCCGGTTTCAATTCTA
TGGTCCTCTTGGTCTCTAGGCAACTGTGGAAGGAGCGGAACTCTAGAGTTTTCGACTCTGCGTTGTCCTCGGTCTCGGAG
GTCCTTCAGTCCATCCTCTCTGAGGGTCATCTATGGTCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17763.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis