Browse Element(s) Details


OsAffx.29913.1.S1_at

Description tigr:9637.m01578
TID=OsAffx.29913.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1833011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g18300OsAffx.29910.1.S1_at11/119+11225371..11225772hypothetical protein
LOC_Os09g18310OsAffx.17770.1.S1_x_at10/119+11231463..11232157retrotransposon, putative, centromere-specific
LOC_Os09g18320Os.18949.1.S1_at10/119+11235232..11239921Bystin family protein, expressed
LOC_Os09g18330OsAffx.29913.1.S1_at11/119+11246739..11247256hypothetical protein
LOC_Os09g18340NANA9+11249798..11252334transposon protein, putative, unclassified
LOC_Os09g18350NANA9+11253661..11254530retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g18360Os.19031.1.A1_at11/119+11257657..11267042Protein kinase domain containing protein, expressed
LOC_Os09g18360OsAffx.9066.1.S1_x_at1/119+11257657..11267042Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29913.1.S1_at--94--5111Chr09:11246808..11246832 (25 bp)
GCACGGAGGGCGCTATCAGATCTAC
LOC_Os09g18330
OsAffx.29913.1.S1_at--368--1271Chr09:11246825..11246849 (25 bp)
AGATCTACAGACAATCCTTGGGCTT
LOC_Os09g18330
OsAffx.29913.1.S1_at--900--3031Chr09:11246837..11246861 (25 bp)
AATCCTTGGGCTTGGTGCAGCGCCA
LOC_Os09g18330
OsAffx.29913.1.S1_at--796--2151Chr09:11246864..11246888 (25 bp)
ACAGCGGCTTCCACAAACATCAAGT
LOC_Os09g18330
OsAffx.29913.1.S1_at--511--2091Chr09:11246880..11246904 (25 bp)
ACATCAAGTGGCCAGCGTCGTGTCA
LOC_Os09g18330
OsAffx.29913.1.S1_at--230--3231Chr09:11246934..11246958 (25 bp)
CAAGTCAACGGTGGCACTGCGGTGC
LOC_Os09g18330
OsAffx.29913.1.S1_at--1094--6671Chr09:11246969..11247043 (25 bp)
GTTGCCGGTGAACCAGGCGCCAACA
LOC_Os09g18330
OsAffx.29913.1.S1_at--538--8371Chr09:11247066..11247090 (25 bp)
GGCGTACATCCCATGGTGGCAACAA
LOC_Os09g18330
OsAffx.29913.1.S1_at--1003--8551Chr09:11247079..11247103 (25 bp)
TGGTGGCAACAATACCGTTGTCCCC
LOC_Os09g18330
OsAffx.29913.1.S1_at--758--8971Chr09:11247121..11247145 (25 bp)
TGAACACCATTCCAGCCACTGTGGC
LOC_Os09g18330
OsAffx.29913.1.S1_at--495--1951Chr09:11247138..11247162 (25 bp)
ACTGTGGCACCGGTTGCCGATCAAA
LOC_Os09g18330
Target Sequence 
GCACGGAGGGCGCTATCAGATCTACAGACAATCCTTGGGCTTGGTGCAGCGCCACCACAGCGGCTTCCACAAACATCAAG
TGGCCAGCGTCGTGTCACGCCAATGGCTCCACCACAACAGCGACAGCAAGTCAACGGTGGCACTGCGGTGCCTATGGCGT
CGTTGCCGGTGAACCAGGCGCCAACAGGGGCTCCTTTACCCCAACGCCGGCGTACATCCCATGGTGGCAACAATACCGTT
GTCCCCCCAGACGCCTACTGTGCTGAACACCATTCCAGCCACTGTGGCACCGGTTGCCGATCAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29913.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis