Browse Element(s) Details


OsAffx.29940.1.S1_x_at

Description tigr:9637.m01748
TID=OsAffx.29940.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g204704/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g20460NANA9+12318666..12319982VQ motif family protein, expressed
LOC_Os09g20470OsAffx.29940.1.S1_x_at4/119+12341440..12341811hypothetical protein
LOC_Os09g20480Os.19228.1.S1_at11/119+12344751..12348658transporter, putative, expressed
LOC_Os09g20490OsAffx.17800.1.S1_at11/119+12354828..12358222transporter, putative, expressed
LOC_Os09g20500OsAffx.17800.2.S1_at11/119+12359741..12362625hypothetical protein
LOC_Os09g20510OsAffx.29941.1.S1_at11/119+12363873..12366414Major Facilitator Superfamily protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29940.1.S1_x_at--91--9691Chr01:4954989..4955152 (25 bp)
TCACGCGATTTACCCTCGGGTTTCT
NONE
OsAffx.29940.1.S1_x_at--751--10632Chr09:12341999..12342023 (25 bp)
TTCCTCCATCCAACTCCTCGTCTTC
NONE
OsAffx.29940.1.S1_x_at--1094--9551Chr01:4954942..4954966 (25 bp)
TCTTCGTCGTCACCGATGGCCATGG
NONE
OsAffx.29940.1.S1_x_at--536--9411Chr01:4954939..4954963 (25 bp)
TCGTCGTCACCGATGGCCATGGTGG
NONE
OsAffx.29940.1.S1_x_at--1044--1431Chr01:4954906..4954930 (25 bp)
AGAACTGACGGAACGAGCTCGCCGG
NONE
OsAffx.29940.1.S1_x_at--410--2651Chr01:4954864..4954888 (25 bp)
AACCAAGGGAGCTCAGTGGTCGGCT
NONE
OsAffx.29940.1.S1_x_at--1057--2511Chr01:4954828..4954852 (25 bp)
AACTTAGGGAGCGAGCTCGGCGACT
NONE
OsAffx.29940.1.S1_x_at--197--9392Chr09:12341675..12341699 (25 bp)
TCGATGCACGCGGTGGCTCTCGACG
LOC_Os09g20470
OsAffx.29940.1.S1_x_at--164--6332Chr09:12341673..12341697 (25 bp)
GATGCACGCGGTGGCTCTCGACGGC
LOC_Os09g20470
OsAffx.29940.1.S1_x_at--727--3932Chr09:12341556..12341580 (25 bp)
CGGCTACCCAAGGATGCCTCTGCCA
LOC_Os09g20470
OsAffx.29940.1.S1_x_at--803--2912Chr09:12341547..12341571 (25 bp)
AAGGATGCCTCTGCCACCACTGCTC
LOC_Os09g20470
Target Sequence 
TCACGCGATTTACCCTCGGGTTTCTTCTTCCTCCATCCAACTCCTCGTCTTCGTCGTCACCGATGGCCATGGTGGCGGCG
AGGAGAACTGACGGAACGAGCTCGCCGGCCGACGGCGGCGAGGAAAACCAAGGGAGCTCAGTGGTCGGCTGCGGCGAGGA
GAACTTAGGGAGCGAGCTCGGCGACTGGCGGTGGGAGCGTGTGGGTGGCGGCGGTNNNNGCNNNNGNNNGNGNGNNNNNN
NNGNNGNNGNCGNNNNNNNNGGNGACGGGAGCGCNNTCGGTNGCGGAGGTCGTCACACGCTNTGGCAGGAGNGCGTGGGC
AGTGGAGNTCGATGCACGCGGTGGCTCTCGACGGCNGTNGTCGCGCGCGGTCGATNAGANCACGTCCNCCTCCGCTGTCC
TCACCAACCCCACCGCGCTCCGCCTGCTCTNCCCCAAGCACTTCGCNCGGCTACCCAAGGATGCCTCTGCCACCACTGCT
C

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29940.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis