Browse Element(s) Details


OsAffx.17800.1.S1_at

Description tigr:9637.m01750
TID=OsAffx.17800.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=probable transporter, 34935-36578 (imported) - Arabidopsis thaliana
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2049011/11transporter, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g20470OsAffx.29940.1.S1_x_at4/119+12341440..12341811hypothetical protein
LOC_Os09g20480Os.19228.1.S1_at11/119+12344751..12348658transporter, putative, expressed
LOC_Os09g20490OsAffx.17800.1.S1_at11/119+12354828..12358222transporter, putative, expressed
LOC_Os09g20500OsAffx.17800.2.S1_at11/119+12359741..12362625hypothetical protein
LOC_Os09g20510OsAffx.29941.1.S1_at11/119+12363873..12366414Major Facilitator Superfamily protein
LOC_Os09g20520OsAffx.17801.1.S1_at11/119+12368673..12370254Major Facilitator Superfamily protein
LOC_Os09g20530NANA9+12371139..12371660Pyruvate decarboxylase isozyme 3, putative
LOC_Os09g20540OsAffx.6001.1.S1_x_at1/119+12375829..12377161expressed protein
LOC_Os09g20550Os.51816.1.S1_at11/119+12382167..12386954zinc finger protein, putative, expressed
LOC_Os09g20550OsAffx.17803.1.S1_x_at10/119+12382167..12386954zinc finger protein, putative, expressed
LOC_Os09g20550OsAffx.17803.1.S1_at7/119+12382167..12386954zinc finger protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
GO:0005351molecular_functionsugar porter activity
GO:0015144molecular_functioncarbohydrate transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17800.1.S1_at--517--8771Chr09:12357627..12357651 (25 bp)
TGTTTGGATACAGGGCAGATGACAA
LOC_Os09g20490
OsAffx.17800.1.S1_at--593--6811Chr09:12357870..12357894 (25 bp)
GTTTTCAGGTTTTTGACTCAGCTAA
LOC_Os09g20490
OsAffx.17800.1.S1_at--1020--7871Chr09:12357877..12357901 (25 bp)
GGTTTTTGACTCAGCTAATGGTGAA
LOC_Os09g20490
OsAffx.17800.1.S1_at--516--5211Chr09:12357899..12357923 (25 bp)
GAATTAGAACTGACCTATGATGTGA
LOC_Os09g20490
OsAffx.17800.1.S1_at--532--5311Chr09:12357922..12357946 (25 bp)
GAAGGATTTACCTGATACTGAAAAG
LOC_Os09g20490
OsAffx.17800.1.S1_at--848--2531Chr09:12357957..12357981 (25 bp)
AACTACTGGCGAACAGGGAATCCTA
LOC_Os09g20490
OsAffx.17800.1.S1_at--1043--2691Chr09:12358000..12358024 (25 bp)
AAGCTTGTCAATTTATTAGGCAAAT
LOC_Os09g20490
OsAffx.17800.1.S1_at--10--6791Chr09:12358025..12358049 (25 bp)
GTTATGAATTCTACAATGCCTATTT
LOC_Os09g20490
OsAffx.17800.1.S1_at--765--2391Chr09:12358056..12358080 (25 bp)
AAACTAGTCTTCTTATTTAGCCATT
LOC_Os09g20490
OsAffx.17800.1.S1_at--871--7631Chr09:12358097..12358121 (25 bp)
GGGACCTATCTGTTGGTCAGTTAGT
LOC_Os09g20490
OsAffx.17800.1.S1_at--113--10771Chr09:12358163..12358187 (25 bp)
TTGAGAAGATCTGATATACTCCCTC
LOC_Os09g20490
Target Sequence 
TGTTTGGATACAGGGCAGATGACAAAGGAAAGAGTATTCAGTTAGACAGGGAGAATGCTGCATCTTTAGCCAAGGCATTG
TACACATCTATTGCAATACCATTTACAATTTGCACCTCCATATACTCGTTCCTGTACTGCAGTTATCCCCGGGATAGAGA
GCGTGCACGTATGCAATCTCTGATAGAATCTGAATTGCAGCAGATGGAGCAGGAAAGTTTTTGTTTGGAAGATGGGGATT
GTCGTTTTCAGGTTTTTGACTCAGCTAATGGTGAATTAGAACTGACCTATGATGTGAAGGATTTACCTGATACTGAAAAG
GATACTGCAAAACTACTGGCGAACAGGGAATCCTAATAGCAAAGGAGAACTTTAAGCTTGTCAATTTATTAGGCAAATGT
TATGAATTCTACAATGCCTATTTTTTATAAAACTAGTCTTCTTATTTAGCCATTTAGAAATTGTAGATTGGGGACCTATC
TGTTGGTCAGTTAGTGTTAGATTGAATCTAGTTGTTTTTTTTTTGTCCATTTGTTGTTGAGAAGATCTGATATACTCCCT
C

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17800.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis