Browse Element(s) Details


OsAffx.6001.1.S1_x_at

Description tigr:9636.m03173
TID=OsAffx.6001.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3176011/11expressed protein
LOC_Os09g205401/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g31730OsAffx.29486.2.S1_x_at1/118+19529677..19530255hypothetical protein
LOC_Os08g31740OsAffx.17278.1.S1_at11/118+19532669..19537354hypothetical protein
LOC_Os08g31740Os.2254.1.S1_at1/118+19532669..19537354hypothetical protein
LOC_Os08g31750Os.49705.1.S1_at11/118+19539916..19543786methyltransferase, putative, expressed
LOC_Os08g31760OsAffx.6001.1.S1_x_at11/118+19550294..19552417expressed protein
LOC_Os08g31770OsAffx.17279.1.S1_at11/118+19561541..19565016NB-ARC domain containing protein, expressed
LOC_Os08g31780NANA8+19568832..19572397NB-ARC domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6001.1.S1_x_at--459--7191Chr08:19551413..19551437 (25 bp)
GTCGGCGGCCTCCATTGCGCTGCTG
LOC_Os08g31760
OsAffx.6001.1.S1_x_at--644--4131Chr08:19551445..19551469 (25 bp)
CGCTGTTCATGCTCACGGCGCTGGT
LOC_Os08g31760
OsAffx.6001.1.S1_x_at--53--8611Chr08:19551466..19551490 (25 bp)
TGGTGCGGCGCATGGCCCCGTACCT
LOC_Os08g31760
OsAffx.6001.1.S1_x_at--49--4491Chr08:19551611..19551635 (25 bp)
GCCGGCGGCGTACGCCTGGACGCAG
LOC_Os08g31760
OsAffx.6001.1.S1_x_at--266--5031Chr08:19551641..19551665 (25 bp)
GCAGTCGCTCGGCTTCATGGGCTAC
LOC_Os08g31760
OsAffx.6001.1.S1_x_at--534--4811Chr08:19551647..19551671 (25 bp)
GCTCGGCTTCATGGGCTACCTCATG
LOC_Os08g31760
OsAffx.6001.1.S1_x_at--761--9591Chr08:19551655..19551679 (25 bp)
TCATGGGCTACCTCATGCTCCAGAT
LOC_Os08g31760
OsAffx.6001.1.S1_x_at--975--612Chr09:12376854..12376877 (24 bp)
ATGCTCCAGATGGTGGACCTCGTCG
LOC_Os09g20540
OsAffx.6001.1.S1_x_at--944--891Chr08:19551748..19551772 (25 bp)
AGGCGCTCGGCCTGGCGCAGATGGT
LOC_Os08g31760
OsAffx.6001.1.S1_x_at--43--7452Chr08:19551867..19551891 (25 bp)
GTGTACGCCGCTTGCTTCGTCGTCG
LOC_Os08g31760
OsAffx.6001.1.S1_x_at--332--6191Chr08:19551917..19551941 (25 bp)
GAGGAAGAAAGCCTACCTCGCCGGC
LOC_Os08g31760
Target Sequence 
GTCGGCGGCCTCCATTGCGCTGCTGCTCCTGCCGCTGTTCATGCTCACGGCGCTGGTGCGGCGCATGGCCCCGTACCTGC
CGCTCCTCCACCGCGCGCTGCTGCTCGCGCAGGCGTACCTCGCCATCTACTTCGCCACGCTCGCGCTCGCCGCCGCCGCC
ACGGGGCTCGAGCCGCTCCGCTTCTTCCACGCCGCCTCGCCGGCGGCGTACGCCTGGACGCAGGCCGCGCAGTCGCTCGG
CTTCATGGGCTACCTCATGCTCCAGATGGTGGACCTCGTCGCCGTCTTCTCCGGCGCCGCCTCGCCGGAGGAGGACGGCA
ACGGGGACGCCACCAAGGCGCTCGGCCTGGCGCAGATGGTCGTCGGCCTCGCCGTCGGCCTGCACTACTACGCCGCCGTG
TTCCACCGCGCCGCGGCCGGCGAGGCCCCCCGCGCGAACTGGCGCGTGTACGCCGTGTACGCCGCTTGCTTCGTCGTCGT
CTGCGCGTGCGCGCGCGCCGAGAGGAGGAAGAAAGCCTACCTCGCCGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6001.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis