Browse Element(s) Details


Os.49705.1.S1_at

Description gb:AK120890.1
DB_XREF= gi:37990513
TID=Os.49705.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49705 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023029G09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023029G09, full insert sequence.
FL= gb:AK120890.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3175011/11methyltransferase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g31700OsAffx.17275.1.S1_x_at10/118+19513610..19515281expressed protein
LOC_Os08g31700OsAffx.17275.1.S1_at10/118+19513610..19515281expressed protein
LOC_Os08g31710Os.11090.1.S1_at11/118+19515662..19517229transporter, putative, expressed
LOC_Os08g31720OsAffx.17276.1.S1_at11/118+19522513..19523186Zinc finger, C3HC4 type family protein, expressed
LOC_Os08g31730OsAffx.29486.2.S1_x_at1/118+19529677..19530255hypothetical protein
LOC_Os08g31740OsAffx.17278.1.S1_at11/118+19532669..19537354hypothetical protein
LOC_Os08g31740Os.2254.1.S1_at1/118+19532669..19537354hypothetical protein
LOC_Os08g31750Os.49705.1.S1_at11/118+19539916..19543786methyltransferase, putative, expressed
LOC_Os08g31760OsAffx.6001.1.S1_x_at11/118+19550294..19552417expressed protein
LOC_Os08g31770OsAffx.17279.1.S1_at11/118+19561541..19565016NB-ARC domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49705.1.S1_at--552--3111Chr08:19540804..19540828 (25 bp)
AATTAGTCGAGTCCTTAGACCTGGG
LOC_Os08g31750
Os.49705.1.S1_at--699--9391Chr08:19540772..19540796 (25 bp)
TCGTTGCTTCCACTTTCGTTGCAGA
LOC_Os08g31750
Os.49705.1.S1_at--197--9971Chr08:19540454..19540478 (25 bp)
TACCGGCAGTAATATCTTCTTATCA
LOC_Os08g31750
Os.49705.1.S1_at--509--5411Chr08:19540429..19540453 (25 bp)
GAAGCGGAGTTCGAAGATCTTTGCA
LOC_Os08g31750
Os.49705.1.S1_at--19--6431Chr08:19540414..19540438 (25 bp)
GATCTTTGCAGAGCGTGTGGGCTTA
LOC_Os08g31750
Os.49705.1.S1_at--648--2551Chr08:19540321..19540345 (25 bp)
AACTGGACAGTCCTCTCAACCTTGT
LOC_Os08g31750
Os.49705.1.S1_at--529--10391Chr08:19540078..19540102 (25 bp)
TTTTGGTTGCTTGTACCTCAATTTT
LOC_Os08g31750
Os.49705.1.S1_at--961--10231Chr08:19540053..19540077 (25 bp)
TTTGTGTATAGGACTCGGCGACTCG
LOC_Os08g31750
Os.49705.1.S1_at--99--4811Chr08:19540028..19540052 (25 bp)
GCTCTTGCAATCCTGTAACTTTTGT
LOC_Os08g31750
Os.49705.1.S1_at--376--6891Chr08:19540005..19540029 (25 bp)
GTATATCGACTCATGCTGCTACTAG
LOC_Os08g31750
Os.49705.1.S1_at--889--7391Chr08:19539950..19539974 (25 bp)
GTGTTCACTATTTATTTAGGTCCCT
LOC_Os08g31750
Target Sequence 
AATTAGTCGAGTCCTTAGACCTGGGGGCGTTTTCGTTGCTTCCACTTTCGTTGCAGANATTNTTCCACCAGCTGTACNGG
TATTGAGGATAGGACGCCCGNACATCAGCCAATTTACCGGCAGTAATATCTTCTTATCAGAAGCGGAGTTCGAAGATCTT
TGCAGAGCGTGTGGGCTTATTGATTTCAAGTTTGTCAGAAATGGATTCTATATAATGTTCTCAGCTACTAAAGCAAGCTA
ATTGATCAACTGGACAGTCCTCTCAACCTTGTCCTGAAAATCATTGATTATGCACTGATTCTCCGNGCCCTTTCTAGTTG
GACTAATAGTTTTACCTGAGGGAAANNNGNNNNNNNANNGTGAGTACNNACATATATTTTTGCTTTACCTAACCATTTTG
GTTGCTTGTACCTCAATTTTTTTGTGTATAGGACTCGGCGACTCGGCTCTTGCAATCCTGTAACTTTTGTATATCGACTC
ATGCTGCTACTAGTAGTATATACAGAGCATAAACAAATTTATTGTGTTCACTATTTATTTAGGTCCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49705.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis