Browse Element(s) Details


OsAffx.17275.1.S1_at

Description tigr:9636.m03167
TID=OsAffx.17275.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3170010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g31670OsAffx.6000.1.S1_at11/118+19499933..19502410transporter, putative
LOC_Os08g31680Os.24718.1.S1_at1/118+19503134..19508739retrotransposon protein, putative, unclassified
LOC_Os08g31690OsAffx.17274.1.S1_at11/118+19511367..19512629F-box domain containing protein, expressed
LOC_Os08g31700OsAffx.17275.1.S1_x_at10/118+19513610..19515281expressed protein
LOC_Os08g31700OsAffx.17275.1.S1_at10/118+19513610..19515281expressed protein
LOC_Os08g31710Os.11090.1.S1_at11/118+19515662..19517229transporter, putative, expressed
LOC_Os08g31720OsAffx.17276.1.S1_at11/118+19522513..19523186Zinc finger, C3HC4 type family protein, expressed
LOC_Os08g31730OsAffx.29486.2.S1_x_at1/118+19529677..19530255hypothetical protein
LOC_Os08g31740OsAffx.17278.1.S1_at11/118+19532669..19537354hypothetical protein
LOC_Os08g31740Os.2254.1.S1_at1/118+19532669..19537354hypothetical protein
LOC_Os08g31750Os.49705.1.S1_at11/118+19539916..19543786methyltransferase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
GO:0005351molecular_functionsugar porter activity
GO:0015144molecular_functioncarbohydrate transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17275.1.S1_at--875--2971Chr08:19513679..19513703 (25 bp)
AATGTAACATTTACCATCCTGGCCC
LOC_Os08g31700
OsAffx.17275.1.S1_at--56--8751Chr08:19513681..19513705 (25 bp)
TGTAACATTTACCATCCTGGCCCGT
LOC_Os08g31700
OsAffx.17275.1.S1_at--1154--2071Chr08:19513685..19513709 (25 bp)
ACATTTACCATCCTGGCCCGTCTAG
LOC_Os08g31700
OsAffx.17275.1.S1_at--867--38519Chr12:23466116..23466137 (22 bp)
CTGGCCCGTCTAGCTCAGTCGGTAG
NONE
OsAffx.17275.1.S1_at--937--108320Chr11:28266556..28266580 (25 bp)
TTGTGGTCGTGGGTTCGAGCCCCAC
NONE
OsAffx.17275.1.S1_at--425--7651Chr09:10871329..10871358 (24 bp)
GGGTTCGAGCCCCACGGTCAACATC
NONE
OsAffx.17275.1.S1_at--936--3251Chr08:19514790..19514814 (25 bp)
CAAACCCCAAATTCACAACGACACG
LOC_Os08g31700
OsAffx.17275.1.S1_at--92--2211Chr08:19514804..19514828 (25 bp)
ACAACGACACGCATGCTCCAGCGAC
LOC_Os08g31700
OsAffx.17275.1.S1_at--1117--10591Chr08:19514839..19514863 (25 bp)
TTCTGCTCCCCACATTTAAGCAAAG
LOC_Os08g31700
OsAffx.17275.1.S1_at--214--9311Chr08:19514845..19514869 (25 bp)
TCCCCACATTTAAGCAAAGCGAGAA
LOC_Os08g31700
OsAffx.17275.1.S1_at--184--4151Chr08:19515068..19515092 (25 bp)
CGCGATCGTCCAGGCGGCGTCGTAC
LOC_Os08g31700
Target Sequence 
AATGTAACATTTACCATCCTGGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG
CCCCACGGTCAACATCCCCATCCAAACCCCAAATTCACAACGACACGCATGCTCCAGCGACTCCGTTCCGCTTCTGCTCC
CCACATTTAAGCAAAGCGAGAAGGAGAGGAGAGGAGAGGAGCTACCGGCGACGGCGATGGGAAGGGAGGCGGAGGCGCGG
CGGCGGTGGACGCTGGTTCTGGTGAACCTGGCGTCGGTGCTGGAGAAGGCCGACGAGGTGCTGCTCCCGGCGGTGTACCG
GGAGGTCGGGGCGGAGCTGGGGGTGTCGCCGACGGCGCTGGGCTCGCTCACCCTGTGCCGCGCGATCGTCCAGGCGGCGT
CGTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17275.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis