Browse Element(s) Details


OsAffx.6000.1.S1_at

Description tigr:9636.m03164
TID=OsAffx.6000.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=BT004567 At1g78130
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3167011/11transporter, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g31660Os.10273.1.S1_at11/118+19477606..19479277VQ motif family protein, expressed
LOC_Os08g31670OsAffx.6000.1.S1_at11/118+19499933..19502410transporter, putative
LOC_Os08g31680Os.24718.1.S1_at1/118+19503134..19508739retrotransposon protein, putative, unclassified
LOC_Os08g31690OsAffx.17274.1.S1_at11/118+19511367..19512629F-box domain containing protein, expressed
LOC_Os08g31700OsAffx.17275.1.S1_x_at10/118+19513610..19515281expressed protein
LOC_Os08g31700OsAffx.17275.1.S1_at10/118+19513610..19515281expressed protein
LOC_Os08g31710Os.11090.1.S1_at11/118+19515662..19517229transporter, putative, expressed
LOC_Os08g31720OsAffx.17276.1.S1_at11/118+19522513..19523186Zinc finger, C3HC4 type family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
GO:0005351molecular_functionsugar porter activity
GO:0015144molecular_functioncarbohydrate transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6000.1.S1_at--828--9551Chr08:19501418..19501442 (25 bp)
TCTTTTACTGCTAGGCTTGCCTGAA
LOC_Os08g31670
OsAffx.6000.1.S1_at--719--5811Chr08:19501443..19501467 (25 bp)
GACCCATCTACAGGTTTTTTGCATG
LOC_Os08g31670
OsAffx.6000.1.S1_at--136--8671Chr08:19501484..19501508 (25 bp)
TGTGGGATTTTGCATCTCCTGGAAT
LOC_Os08g31670
OsAffx.6000.1.S1_at--47--1211Chr08:19501961..19501985 (25 bp)
AGTATTTATGCACTCGATCGTTCCC
LOC_Os08g31670
OsAffx.6000.1.S1_at--1150--3051Chr08:19501989..19502013 (25 bp)
AATCTTTATTTGCTTCATTCGCTCC
LOC_Os08g31670
OsAffx.6000.1.S1_at--163--4351Chr08:19502015..19502039 (25 bp)
CCAGTTGTCGGGTATCTAGCAGAGC
LOC_Os08g31670
OsAffx.6000.1.S1_at--475--9991Chr08:19502118..19502142 (25 bp)
TAGCCAAGGCTCTTTACACGGCAAT
LOC_Os08g31670
OsAffx.6000.1.S1_at--55--6351Chr08:19502152..19502176 (25 bp)
GATGCTACTCTGTTGCTTCATCTAC
LOC_Os08g31670
OsAffx.6000.1.S1_at--569--451Chr08:19502171..19502195 (25 bp)
ATCTACTCCCTGTTGTACCAAACAT
LOC_Os08g31670
OsAffx.6000.1.S1_at--181--6472Chr08:19502233..19502257 (25 bp)
GATAACTTCAGAGCTGCAGCGGATT
LOC_Os08g31670
OsAffx.6000.1.S1_at--469--8131Chr08:19502263..19502287 (25 bp)
GGACAGATCTCATCGGACCAGTGAT
LOC_Os08g31670
Target Sequence 
TCTTTTACTGCTAGGCTTGCCTGAAGACCCATCTACAGGTTTTTTGCATGGTTCAGTCATGTTCATTGTGGGATTTTGCA
TCTCCTGGAATGCTCCTGCTACAAACAACCCTATATTTGCAGAGATTGTTCCTGAGAGATCAAGGACTAGTATTTATGCA
CTCGATCGTTCCCTTGAATCTTTATTTGCTTCATTCGCTCCACCAGTTGTCGGGTATCTAGCAGAGCATGCATACGGCTA
CAACCCAATCACTTATGGAGTTGGCATAAGCAGTGTTGAGAGGGACAAGGAAAATGCCGCTGCCCTAGCCAAGGCTCTTT
ACACGGCAATAGCCATCCCGATGCTACTCTGTTGCTTCATCTACTCCCTGTTGTACCAAACATATCCTCGAGACAGGGAG
AGGGCAAGAATGGATTCGCTGATAACTTCAGAGCTGCAGCGGATTGAACCGGACAGATCTCATCGGACCAGTGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6000.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis