Browse Element(s) Details


Os.10273.1.S1_at

Description gb:AK109792.1
DB_XREF= gi:32995001
TID=Os.10273.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.10273 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-147-D10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-147-D10, full insert sequence.
FL= gb:AK109792.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3166011/11VQ motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g31640OsAffx.5999.1.S1_at10/118+19457972..19459409hypothetical protein
LOC_Os08g31649NANA8+19462593..19463778hypothetical protein
LOC_Os08g31660Os.10273.1.S1_at11/118+19477606..19479277VQ motif family protein, expressed
LOC_Os08g31670OsAffx.6000.1.S1_at11/118+19499933..19502410transporter, putative
LOC_Os08g31680Os.24718.1.S1_at1/118+19503134..19508739retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10273.1.S1_at--829--9451Chr08:19478759..19478783 (25 bp)
TCGGCCTCACGCATGGCATCATGGG
LOC_Os08g31660
Os.10273.1.S1_at--1060--631Chr08:19478800..19478824 (25 bp)
ATGCACCAGCAACAACGAAGCCGCG
LOC_Os08g31660
Os.10273.1.S1_at--1006--5111Chr08:19478900..19478924 (25 bp)
GCAAGAAGACGACCTTCTCGTCCGG
LOC_Os08g31660
Os.10273.1.S1_at--916--5071Chr08:19478944..19478968 (25 bp)
GCAGCGCCTCAACTGGAGCACAATG
LOC_Os08g31660
Os.10273.1.S1_at--261--691Chr08:19479034..19479058 (25 bp)
ATGAGAACGCAATCCGTGGACTCGT
LOC_Os08g31660
Os.10273.1.S1_at--1081--4231Chr08:19479047..19479071 (25 bp)
CCGTGGACTCGTGGATTTGTACATC
LOC_Os08g31660
Os.10273.1.S1_at--1153--7011Chr08:19479065..19479089 (25 bp)
GTACATCGGAGTAGGTCAATTCACT
LOC_Os08g31660
Os.10273.1.S1_at--565--7831Chr08:19479078..19479102 (25 bp)
GGTCAATTCACTCGCTTCATTATAT
LOC_Os08g31660
Os.10273.1.S1_at--819--9511Chr08:19479184..19479208 (25 bp)
TCTCTACTACTCCTTTGGGTGTTTA
LOC_Os08g31660
Os.10273.1.S1_at--1043--7691Chr08:19479200..19479224 (25 bp)
GGGTGTTTAATTCCCCTATTTGCAT
LOC_Os08g31660
Os.10273.1.S1_at--951--4951Chr08:19479221..19479245 (25 bp)
GCATATGCTCTTTGTGTAGATCGAT
LOC_Os08g31660
Target Sequence 
TCGGCCTCACGCATGGCATCATGGGCGCCGACGGGTCGCACATGCACCAGCAACAACGAAGCCGCGGCCACGGCCACGGC
GGCGACGAGCTGTCCGGCGTGGTCGGGGGCGCGTCCATGACCCGGAGCGTCGGCGGCGGCGGCAAGAAGACGACCTTCTC
GTCCGGCGCCGGCGCGGCGGCCCACGCAGCGCCTCAACTGGAGCACAATGCGGAGAGCACGTCGGTCACCGTCGCCGCAG
CGCCGACACCTTCGTCGGCGGCGGCGACGGCGGCGATGAGAACGCAATCCGTGGACTCGTGGATTTGTACATCGGAGTAG
GTCAATTCACTCGCTTCATTATATTCCAAGAGCAGATTGGCTTGTAGTAGTAAAGCTCATTTAGCTAGTAGCTTAATTTC
ATTTGGTTCTTTAATATCTTATTAATCTCTACTACTCCTTTGGGTGTTTAATTCCCCTATTTGCATATGCTCTTTGTGTA
GATCGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10273.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis