Browse Element(s) Details


OsAffx.5999.1.S1_at

Description tigr:9636.m03161
TID=OsAffx.5999.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3164010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g31620OsAffx.5998.1.S1_at11/118+19442053..19443258hypothetical protein
LOC_Os08g31630Os.12099.1.S1_s_at11/118+19446076..19450528trehalose-phosphatase family protein, expressed
LOC_Os08g31640OsAffx.5999.1.S1_at10/118+19457972..19459409hypothetical protein
LOC_Os08g31649NANA8+19462593..19463778hypothetical protein
LOC_Os08g31660Os.10273.1.S1_at11/118+19477606..19479277VQ motif family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5999.1.S1_at--20--7771Chr08:19458035..19458059 (25 bp)
GGTGATGTCGCCAGCCGTGCCCTTG
LOC_Os08g31640
OsAffx.5999.1.S1_at--121--4411Chr08:19458080..19458103 (24 bp)
GCCACGTGTGCGGTGGAGGTATCGT
LOC_Os08g31640
OsAffx.5999.1.S1_at--943--6131NONE
GAGGTATCGTGGCTCCTACGGGACG
NONE
OsAffx.5999.1.S1_at--1114--4591Chr08:19458819..19458843 (25 bp)
GCGACTCCCACGTGTGGATCCGGCG
LOC_Os08g31640
OsAffx.5999.1.S1_at--971--7711Chr08:19458843..19458867 (25 bp)
GGTGGCTTCTCCTGCGGGTGGATCC
LOC_Os08g31640
OsAffx.5999.1.S1_at--910--3931Chr08:19458867..19458891 (25 bp)
CGGCGGTAGCAGTGTCTCTCCTTCT
LOC_Os08g31640
OsAffx.5999.1.S1_at--1010--8351Chr08:19458868..19458892 (25 bp)
GGCGGTAGCAGTGTCTCTCCTTCTC
LOC_Os08g31640
OsAffx.5999.1.S1_at--862--3531Chr08:19458933..19458957 (25 bp)
CATCTCTACCGCTGCGGCGTCGTGG
LOC_Os08g31640
OsAffx.5999.1.S1_at--1054--7191Chr08:19458951..19458975 (25 bp)
GTCGTGGCGTCCATGCCCTTGATGG
LOC_Os08g31640
OsAffx.5999.1.S1_at--549--3991Chr08:19458953..19458977 (25 bp)
CGTGGCGTCCATGCCCTTGATGGCA
LOC_Os08g31640
OsAffx.5999.1.S1_at--65--4611Chr08:19458978..19459002 (25 bp)
GCGACTCCTGCGGATTCGACGAATC
LOC_Os08g31640
Target Sequence 
GGTGATGTCGCCAGCCGTGCCCTTGGGGAGGGGTCGCCGACCGCGGCCACGTGTGCGGTGGAGGTATCGTGGCTCCTACG
GGACGGCTGCGACGACGGCGACTCCCACGTGTGGATCCGGCGGTGGCTTCTCCTGCGGGTGGATCCGGCGGTAGCAGTGT
CTCTCCTTCTCTCCCACCCCACCACCGCAGAGGCGCAGACCCTCCTCCTCCCATCTCTACCGCTGCGGCGTCGTGGCGTC
CATGCCCTTGATGGCAGCGACTCCTGCGGATTCGACGAATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5999.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis