Browse Element(s) Details


OsAffx.5998.1.S1_at

Description tigr:9636.m03159
TID=OsAffx.5998.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3162011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g31590NANA8+19418166..19418456hypothetical protein
LOC_Os08g31600OsAffx.29457.1.S1_at11/118+19423320..19424178hypothetical protein
LOC_Os08g31610NANA8+19426268..19427632hypothetical protein
LOC_Os08g31620OsAffx.5998.1.S1_at11/118+19442053..19443258hypothetical protein
LOC_Os08g31630Os.12099.1.S1_s_at11/118+19446076..19450528trehalose-phosphatase family protein, expressed
LOC_Os08g31640OsAffx.5999.1.S1_at10/118+19457972..19459409hypothetical protein
LOC_Os08g31649NANA8+19462593..19463778hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5998.1.S1_at--1012--3391Chr08:19442667..19442691 (25 bp)
CAGCTCTATCTCAAGTCCAACATAT
LOC_Os08g31620
OsAffx.5998.1.S1_at--637--2291Chr08:19442694..19442718 (25 bp)
AAATGATGTTCCATCCAGCACCAAG
LOC_Os08g31620
OsAffx.5998.1.S1_at--498--4311Chr08:19442720..19442744 (25 bp)
CCATTTCAGCCTCATTTTTCACAGA
LOC_Os08g31620
OsAffx.5998.1.S1_at--645--1091Chr08:19442774..19442798 (25 bp)
AGTGGGTGTCACGAATTCGCGTCGC
LOC_Os08g31620
OsAffx.5998.1.S1_at--213--6931Chr08:19442838..19442862 (25 bp)
GTATGTGCTCACTCATATTGGCGGC
LOC_Os08g31620
OsAffx.5998.1.S1_at--507--10231Chr08:19442853..19442877 (25 bp)
TATTGGCGGCGTTTCATTGTTTGAG
LOC_Os08g31620
OsAffx.5998.1.S1_at--293--9611Chr08:19442926..19442950 (25 bp)
TCATCAGCTCTTGCATTTGTTGAAA
LOC_Os08g31620
OsAffx.5998.1.S1_at--1054--8591Chr08:19443005..19443029 (25 bp)
TGGTGCCAAACTCCATGGTCAATGT
LOC_Os08g31620
OsAffx.5998.1.S1_at--986--7291Chr08:19443036..19443060 (25 bp)
GTGCTGTGAGACCAGTGACATTCCA
LOC_Os08g31620
OsAffx.5998.1.S1_at--171--8371Chr08:19443092..19443116 (25 bp)
GGCGGGCTTGTTCATATAGCAATCA
LOC_Os08g31620
OsAffx.5998.1.S1_at--79--10731Chr08:19443193..19443217 (25 bp)
TTGCTTGACAAGATATTTCCCTGGC
LOC_Os08g31620
Target Sequence 
CAGCTCTATCTCAAGTCCAACATATGTAAATGATGTTCCATCCAGCACCAAGCCCATTTCAGCCTCATTTTTCACAGAAA
GGAAGGGCACAAGCCAACGTATCATAAAGTGGGTGTCACGAATTCGCGTCGCTCATCGCCCAATACGTTGGGCCATGAAG
AAAAAAGAGGTGTATGTGCTCACTCATATTGGCGGCGTTTCATTGTTTGAGATGAATGAAAATGATCTAGTACACGAAAC
GTCTTACGAAAGCAATGAATCATCAGCTCTTGCATTTGTTGAAATGCCACAGAATATCAAGCTACCAGTGGAGCATCTCA
CCCCTTGGGTTCAAAATATGGTGCCAAACTCCATGGTCAATGTGGTTGTGTGCTGTGAGACCAGTGACATTCCAATGAGC
ATATGGTGTTTGTGTAGGCCACTATGGCGGGCTTGTTCATATAGCAATCAAATGCTTCAGGAGGTTTTTCCATGGAGTAG
AGATGGGTTATGTCCCTGGAAATATGAAACAAAAGGTGATCAATTATTGCTTGACAAGATATTTCCCTGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5998.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis