Browse Element(s) Details


Os.12099.1.S1_s_at

Description gb:CF308968
DB_XREF= gi:33680729
DB_XREF=ABF--02-P17.g1
CLONE=ABF--02-P17
TID=Os.12099.1
CNT=5
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.12099 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3163011/11trehalose-phosphatase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g31600OsAffx.29457.1.S1_at11/118+19423320..19424178hypothetical protein
LOC_Os08g31610NANA8+19426268..19427632hypothetical protein
LOC_Os08g31620OsAffx.5998.1.S1_at11/118+19442053..19443258hypothetical protein
LOC_Os08g31630Os.12099.1.S1_s_at11/118+19446076..19450528trehalose-phosphatase family protein, expressed
LOC_Os08g31640OsAffx.5999.1.S1_at10/118+19457972..19459409hypothetical protein
LOC_Os08g31649NANA8+19462593..19463778hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005992biological_processtrehalose biosynthesis
GO:0004805molecular_functiontrehalose-phosphatase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12099.1.S1_s_at--439--6491Chr08:19449942..19449966 (25 bp)
GATATCCTCAAGAGGAACCCCTTCT
LOC_Os08g31630
Os.12099.1.S1_s_at--798--9511Chr08:19449966..19449990 (25 bp)
TCTCTCAGCATGTCTTGTCTTGCGA
LOC_Os08g31630
Os.12099.1.S1_s_at--677--5651Chr08:19449991..19450015 (25 bp)
GACAGATTTACCAAGTCCAGTTGTT
LOC_Os08g31630
Os.12099.1.S1_s_at--775--2671Chr08:19450018..19450042 (25 bp)
AAGCTGGTTCCTGTTTTTACTGGTG
LOC_Os08g31630
Os.12099.1.S1_s_at--110--8971Chr08:19450048..19450072 (25 bp)
TGAAACATCAGTTCTCGTGTGCTTT
LOC_Os08g31630
Os.12099.1.S1_s_at--1078--6711Chr08:19450058..19450082 (25 bp)
GTTCTCGTGTGCTTTCTGTGATAAG
LOC_Os08g31630
Os.12099.1.S1_s_at--23--251Chr08:19450117..19450141 (25 bp)
ATATAGTAGTTCTTTCGCTGCCTGT
LOC_Os08g31630
Os.12099.1.S1_s_at--576--6431Chr08:19450151..19450175 (25 bp)
GATCAGTTGAGCTCAATAAGCCATA
LOC_Os08g31630
Os.12099.1.S1_s_at--535--332Chr08:19450351..19450375 (25 bp)
ATACTACTAATACCCTTGATGATGA
LOC_Os08g31630
Os.12099.1.S1_s_at--1085--2611Chr08:19450404..19450428 (25 bp)
AACCGTGAATTATACTTACTACATG
LOC_Os08g31630
Os.12099.1.S1_s_at--762--2371Chr08:19450457..19450481 (25 bp)
AAACTGTTGATTTTACATGTCCCAA
LOC_Os08g31630
Target Sequence 
GATATCCTCAAGAGGAACCCCTTCTCTCTCAGCATGTCTTGTCTTGCGAGACAGATTTACCAAGTCCAGTTGTTAAAAGC
TGGTTCCTGTTTTTACTGGTGTGATGTGAAACATCAGTTCTCGTGTGCTTTCTGTGATAAGTTGCACATATCGTAAAACA
GTGTTATTGATAGTGATATAGTAGTTCTTTCGCTGCCTGTGTTAGCCGTGATCAGTTGAGCTCAATAAGCCATAGAGAAA
TGAAGAGACTAAAAAAAAACTTGTATGTTTGAGTCATTATCAGTTTTAAAGCCAAGTCTGAAAAATTAACCACGATTAAA
AAGACCCCTATATAATTAAGTTTAAAAATTTAAATTTTGGTTATGATTGATAAGTGAACTATTACAGAATGGTAGTAGCA
TATATTTATATACTACTAATACCCTTGATGATGATAATAACGGTTCAAATCTACAACAGAAGAACCGTGAATTATACTTA
CTACATGCAAAATTCTAATAGACAGAAGTGCTTGCAAACTGTTGATTTTACATGTCCCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12099.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis