Browse Element(s) Details


OsAffx.17279.1.S1_at

Description tigr:9636.m03174
TID=OsAffx.17279.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=NB-ARC domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3177011/11NB-ARC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g31740OsAffx.17278.1.S1_at11/118+19532669..19537354hypothetical protein
LOC_Os08g31740Os.2254.1.S1_at1/118+19532669..19537354hypothetical protein
LOC_Os08g31750Os.49705.1.S1_at11/118+19539916..19543786methyltransferase, putative, expressed
LOC_Os08g31760OsAffx.6001.1.S1_x_at11/118+19550294..19552417expressed protein
LOC_Os08g31770OsAffx.17279.1.S1_at11/118+19561541..19565016NB-ARC domain containing protein, expressed
LOC_Os08g31780NANA8+19568832..19572397NB-ARC domain containing protein, expressed
LOC_Os08g31790OsAffx.16833.2.S1_at9/118+19578315..19580035hypothetical protein
LOC_Os08g31790OsAffx.16833.1.S1_x_at1/118+19578315..19580035hypothetical protein
LOC_Os08g31800Os.24903.1.A1_at10/118+19582695..19586834NB-ARC domain containing protein, expressed
LOC_Os08g31810Os.9309.1.S1_at11/118+19588424..19593153RNA recognition motif family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009626biological_processhypersensitive response
GO:0019897cellular_componentextrinsic to plasma membrane
GO:0000166molecular_functionnucleotide binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17279.1.S1_at--484--2811Chr08:19562166..19562190 (25 bp)
AAGATCTTACAAAACATGCCTGCGT
LOC_Os08g31770
OsAffx.17279.1.S1_at--554--591Chr08:19562151..19562175 (25 bp)
ATGCCTGCGTTGCTATCTCTTAAAC
LOC_Os08g31770
OsAffx.17279.1.S1_at--1155--6151Chr08:19562118..19562142 (25 bp)
GAGGAATCCCCACAAGAAACACTAG
LOC_Os08g31770
OsAffx.17279.1.S1_at--1033--1151Chr08:19562095..19562119 (25 bp)
AGTCATTAGTCGCTGTGGATTCCAA
LOC_Os08g31770
OsAffx.17279.1.S1_at--97--2831Chr08:19562064..19562088 (25 bp)
AAGTTGTTCTATTTTTATCCAGTGA
LOC_Os08g31770
OsAffx.17279.1.S1_at--98--7391Chr08:19562036..19562060 (25 bp)
GTGAGCTTGGTTTGATGTTTCGGAA
LOC_Os08g31770
OsAffx.17279.1.S1_at--323--1591Chr08:19561961..19561985 (25 bp)
AGCTCCAGCGGCTTGAGTTTCGATA
LOC_Os08g31770
OsAffx.17279.1.S1_at--948--31Chr08:19561937..19561961 (25 bp)
ATTGTGCTCATGATGCAATGTCTGC
LOC_Os08g31770
OsAffx.17279.1.S1_at--916--2711Chr08:19561866..19561890 (25 bp)
AAGCATCTCGGTGTCAGCATTCATT
LOC_Os08g31770
OsAffx.17279.1.S1_at--546--6211Chr08:19561815..19561839 (25 bp)
GAGGCTGCTGAGTCTGCAATTAGAA
LOC_Os08g31770
OsAffx.17279.1.S1_at--115--10031Chr08:19561795..19561819 (25 bp)
TAGAAATGCAGTCTACCTTCTTCCC
LOC_Os08g31770
Target Sequence 
AAGATCTTACAAAACATGCCTGCGTTGCTATCTCTTAAACTTTACCTTGAGGAATCCCCACAAGAAACACTAGTCATTAG
TCGCTGTGGATTCCAATCTTTAAAGTTGTTCTATTTTTATCCAGTGAATGGTGAGCTTGGTTTGATGTTTCGGAAAAACA
AAAAGGATGGATTGGGTTTGATGTTTGAAGAAGGAGCAACACCAAAGCTCCAGCGGCTTGAGTTTCGATATTGTGCTCAT
GATGCAATGTCTGCATATGGCGTTGATTTTGATTTCGGTATCAAGCAACTTACCTCCCTCAAGCATCTCGGTGTCAGCAT
TCATTGCAGAGGTGCAAGGAATTGGGAGGTGGAGGCTGCTGAGTCTGCAATTAGAAATGCAGTCTACCTTCTTCCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17279.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis