Browse Element(s) Details


Os.9309.1.S1_at

Description gb:AK059631.1
DB_XREF= gi:32969649
TID=Os.9309.1
CNT=20
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9309 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-307-B02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-031-A04, full insert sequence.
FL= gb:AK104578.1 gb:AK059631.1 gb:AK099367.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3181011/11RNA recognition motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g31770OsAffx.17279.1.S1_at11/118+19561541..19565016NB-ARC domain containing protein, expressed
LOC_Os08g31780NANA8+19568832..19572397NB-ARC domain containing protein, expressed
LOC_Os08g31790OsAffx.16833.2.S1_at9/118+19578315..19580035hypothetical protein
LOC_Os08g31790OsAffx.16833.1.S1_x_at1/118+19578315..19580035hypothetical protein
LOC_Os08g31800Os.24903.1.A1_at10/118+19582695..19586834NB-ARC domain containing protein, expressed
LOC_Os08g31810Os.9309.1.S1_at11/118+19588424..19593153RNA recognition motif family protein, expressed
LOC_Os08g31820NANA8+19601879..19602343hypothetical protein
LOC_Os08g31830Os.36859.1.S1_at11/118+19602879..19606389expressed protein
LOC_Os08g31840Os.15674.1.S1_at8/118+19606824..19611657TBC domain containing protein, expressed
LOC_Os08g31850Os.6288.1.S1_at11/118+19612719..19614221expressed protein
LOC_Os08g31860Os.30528.1.S1_at11/118+19614600..19615993expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0003676molecular_functionnucleic acid binding
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9309.1.S1_at--234--5131Chr08:19590497..19590521 (25 bp)
GCAAATTGCGATTGTTCCACCTGAG
LOC_Os08g31810
Os.9309.1.S1_at--86--7931Chr08:19589719..19589743 (25 bp)
GGATTGATTACGAGTGTCCACCCCT
LOC_Os08g31810
Os.9309.1.S1_at--504--10431Chr08:19588772..19588794 (23 bp)
TTATCGGCAGCGTTCAGCCTTCAGC
LOC_Os08g31810
Os.9309.1.S1_at--182--7931Chr08:19588729..19588753 (25 bp)
GGATTAGTGCCTTTTGACCAGTAGT
LOC_Os08g31810
Os.9309.1.S1_at--894--5791Chr08:19588665..19588689 (25 bp)
GACGAAGACGTGTCAACATCATTTT
LOC_Os08g31810
Os.9309.1.S1_at--794--2091Chr08:19588650..19588674 (25 bp)
ACATCATTTTGTTGCGTGTTTAATC
LOC_Os08g31810
Os.9309.1.S1_at--592--3051Chr08:19588629..19588653 (25 bp)
AATCGGTGTTGTATCAGTGTGACCA
LOC_Os08g31810
Os.9309.1.S1_at--541--2251Chr08:19588584..19588608 (25 bp)
AAATTTCTGAGATTACGACTGGTAT
LOC_Os08g31810
Os.9309.1.S1_at--741--3471Chr08:19588511..19588535 (25 bp)
CAGGTATCCTCTCCCAAGCGTATGT
LOC_Os08g31810
Os.9309.1.S1_at--1123--6651Chr08:19588472..19588496 (25 bp)
GTTGAATCTGCATCCAGTTTGTTGG
LOC_Os08g31810
Os.9309.1.S1_at--987--7931Chr08:19588449..19588473 (25 bp)
GGATTTTGTCTCTAGTTTGCCAATT
LOC_Os08g31810
Target Sequence 
GCAAATTGCGATTGTTCCACCTGAGAAAATTCATCCAAAATTGTGGAAAGGTGTGCGACGGGGGTTTATACCAATTGATC
GGGTAGCAATTGAACGGAGGAGGCTGAACAAGGATAAAACAATAGAAGAGCACAAAAAGTTGGTTGACAAAATCGTAAAA
CGGGATGAGAAGCGTCGCAAAAGAATCAAAGCTGCTGGGATTGATTACGAGTGTCCACCCCTTATCGGCAGCGTTCAGCC
TTCAGCTAAGAAGATCAAGTTTGAGGATTAGTGCCTTTTGACCAGTAGTGACAGGACAGTCGAGTAAAATGACTGGTTTG
TTTTTAGTGACGAAGACGTGTCAACATCATTTTGTTGCGTGTTTAATCGGTGTTGTATCAGTGTGACCAAAATTGCACAA
CGAAGCAGGAAATTTCTGAGATTACGACTGGTATATCTTTGAGAAAATAGAAATCATACTGTGTTTTCCCGCCGCTCAAG
CCCAGGTATCCTCTCCCAAGCGTATGTGGGAATTATACAAAGTTGAATCTGCATCCAGTTTGTTGGATTTTGTCTCTAGT
TTGCCAATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9309.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis