Browse Element(s) Details


Os.30528.1.S1_at

Description gb:AK108716.1
DB_XREF= gi:32993925
TID=Os.30528.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.30528 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-150-B08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-150-B08, full insert sequence.
FL= gb:AK108716.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3186011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g31810Os.9309.1.S1_at11/118+19588424..19593153RNA recognition motif family protein, expressed
LOC_Os08g31820NANA8+19601879..19602343hypothetical protein
LOC_Os08g31830Os.36859.1.S1_at11/118+19602879..19606389expressed protein
LOC_Os08g31840Os.15674.1.S1_at8/118+19606824..19611657TBC domain containing protein, expressed
LOC_Os08g31850Os.6288.1.S1_at11/118+19612719..19614221expressed protein
LOC_Os08g31860Os.30528.1.S1_at11/118+19614600..19615993expressed protein
LOC_Os08g31870OsAffx.17282.1.S1_at11/118+19624234..19627960Cell division cycle protein 48 homolog, putative
LOC_Os08g31880Os.20810.2.S1_x_at1/118+19630156..19631385hypothetical protein
LOC_Os08g31890NANA8+19633324..19634571hypothetical protein
LOC_Os08g31900OsAffx.17283.1.S1_at11/118+19637698..19639363hypothetical protein
LOC_Os08g31900OsAffx.26378.1.S1_at2/118+19637698..19639363hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.30528.1.S1_at--457--7391Chr08:19614852..19614876 (25 bp)
GTGGTGGCGTTTGACTTTTCCCACG
LOC_Os08g31860
Os.30528.1.S1_at--780--5691Chr08:19614840..19614864 (25 bp)
GACTTTTCCCACGTCAACAAGATCA
LOC_Os08g31860
Os.30528.1.S1_at--1032--10011Chr08:19614813..19614837 (25 bp)
TAGACAACTACTAGGACCAGTACTA
LOC_Os08g31860
Os.30528.1.S1_at--34--7991Chr08:19614800..19614824 (25 bp)
GGACCAGTACTAGCGAAGACCTTTC
LOC_Os08g31860
Os.30528.1.S1_at--394--5371Chr08:19614786..19614810 (25 bp)
GAAGACCTTTCAATTGCAACTAGAT
LOC_Os08g31860
Os.30528.1.S1_at--410--5151Chr08:19614771..19614795 (25 bp)
GCAACTAGATCAGTACGAGACCTTT
LOC_Os08g31860
Os.30528.1.S1_at--116--1391Chr08:19614754..19614778 (25 bp)
AGACCTTTCGATCGCTTGTATTTGC
LOC_Os08g31860
Os.30528.1.S1_at--531--10711Chr08:19614733..19614757 (25 bp)
TTGCGTAGTTGTATACTCGTGTTGT
LOC_Os08g31860
Os.30528.1.S1_at--9--3671Chr08:19614691..19614715 (25 bp)
CTTTTTGCAAGGATTGTACTGTATA
LOC_Os08g31860
Os.30528.1.S1_at--786--6911Chr08:19614656..19614680 (25 bp)
GTATGCATGCGTGTATAACCTTAGA
LOC_Os08g31860
Os.30528.1.S1_at--1085--6371Chr08:19614633..19614657 (25 bp)
GATATTGTTCTTTACTACGGTTAGT
LOC_Os08g31860
Target Sequence 
GTGGTGGCGTTTGACTTTTCCCACGTCAACAAGATCAACTAGACAACTACTAGGACCAGTACTAGCGAAGACCTTTCAAT
TGCAACTAGATCAGTACGAGACCTTTCGATCGCTTGTATTTGCGTAGTTGTATACTCGTGTTGTATTTGAGTTTTTTTTT
TNCTTTTTGCAAGGATTGTACTGTATATGATTATGTTGTATGCATGCGTGTATAACCTTAGATATTGTTCTTTACTACGG
TTAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.30528.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis