Browse Element(s) Details


OsAffx.17283.1.S1_at

Description tigr:9636.m03187
TID=OsAffx.17283.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3190011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g31850Os.6288.1.S1_at11/118+19612719..19614221expressed protein
LOC_Os08g31860Os.30528.1.S1_at11/118+19614600..19615993expressed protein
LOC_Os08g31870OsAffx.17282.1.S1_at11/118+19624234..19627960Cell division cycle protein 48 homolog, putative
LOC_Os08g31880Os.20810.2.S1_x_at1/118+19630156..19631385hypothetical protein
LOC_Os08g31890NANA8+19633324..19634571hypothetical protein
LOC_Os08g31900OsAffx.17283.1.S1_at11/118+19637698..19639363hypothetical protein
LOC_Os08g31900OsAffx.26378.1.S1_at2/118+19637698..19639363hypothetical protein
LOC_Os08g31910Os.20810.4.S1_at3/118+19642384..19648692expressed protein
LOC_Os08g31910OsAffx.8676.1.S1_at1/118+19642384..19648692expressed protein
LOC_Os08g31910Os.20810.2.S1_x_at1/118+19642384..19648692expressed protein
LOC_Os08g31920Os.20810.2.S1_x_at10/118+19654435..19656697retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os08g31920Os.20810.2.S1_at8/118+19654435..19656697retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os08g31930Os.54248.1.S1_at11/118+19663607..19668320BRCA1 C Terminus domain containing protein, expressed
LOC_Os08g31930Os.32811.1.S1_at3/118+19663607..19668320BRCA1 C Terminus domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006865biological_processamino acid transport
GO:0016020cellular_componentmembrane
GO:0015359molecular_functionamino acid permease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17283.1.S1_at--149--7991Chr08:19638217..19638240 (24 bp)
GGATGCTAGCAATATGCTTCCTGCT
LOC_Os08g31900
OsAffx.17283.1.S1_at--937--10131Chr08:19638205..19638229 (25 bp)
TATGCTTCCTGCTTTGCACGTTCAA
LOC_Os08g31900
OsAffx.17283.1.S1_at--166--4631Chr08:19638195..19638219 (25 bp)
GCTTTGCACGTTCAACTACGGAGCA
LOC_Os08g31900
OsAffx.17283.1.S1_at--17--2031Chr08:19638181..19638205 (25 bp)
ACTACGGAGCAATCAATGGCGGCGC
LOC_Os08g31900
OsAffx.17283.1.S1_at--371--8311Chr08:19638154..19638178 (25 bp)
GGCTAGCTACCTCATGTTCGGAGAT
LOC_Os08g31900
OsAffx.17283.1.S1_at--93--8811Chr08:19638140..19638164 (25 bp)
TGTTCGGAGATAGCGTGCTGTCCCA
LOC_Os08g31900
OsAffx.17283.1.S1_at--815--2631Chr08:19638105..19638129 (25 bp)
AACCTCATCGCGGTGAGACTCATCT
LOC_Os08g31900
OsAffx.17283.1.S1_at--357--5991Chr08:19638091..19638115 (25 bp)
GAGACTCATCTCAAAGGTCGCCATA
LOC_Os08g31900
OsAffx.17283.1.S1_at--1071--9071Chr08:19638056..19638080 (25 bp)
TGCTCAACCCGTTATCCAAGTATGC
LOC_Os08g31900
OsAffx.17283.1.S1_at--256--9211Chr08:19638042..19638066 (25 bp)
TCCAAGTATGCACTGGTGGTCACGC
LOC_Os08g31900
OsAffx.17283.1.S1_at--1155--8611Chr08:19637892..19637916 (25 bp)
TGGTGTGATCGCTGCTCATCGTCTC
LOC_Os08g31900
Target Sequence 
GGATGCTAGCAATATGCTTCCTGCTTTGCACGTTCAACTACGGAGCAATCAATGGCGGCGCTCGGCTAGCTACCTCATGT
TCGGAGATAGCGTGCTGTCCCAGCTGACGCTCAACCTCATCGCGGTGAGACTCATCTCAAAGGTCGCCATATACACGACG
CTGCTCAACCCGTTATCCAAGTATGCACTGGTGGTCACGCCGATCGCGGCAGCCATTGAGGAGAGGATCCGCGGCGCCGT
CGACGTCTCCGTGGCGGTGAGGACGCTGCTGGTCCTTAGCACGGTGGCCGTGCCGCTCGCTGTACCGTCGTGTACCTCAT
GGCGCTGGTGTGATCGCTGCTCATCGTCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17283.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis